Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM186B (family with sequence similarity 186 member B)

Identity

Alias_namesC12orf25
chromosome 12 open reading frame 25
family with sequence similarity 186, member B
Alias_symbol (synonym)DKFZP434J0113
Other alias
HGNC (Hugo) FAM186B
LocusID (NCBI) 84070
Atlas_Id 63095
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 49587505 and ends at 49605650 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM186B   25296
Cards
Entrez_Gene (NCBI)FAM186B  84070  family with sequence similarity 186 member B
AliasesC12orf25
GeneCards (Weizmann)FAM186B
Ensembl hg19 (Hinxton)ENSG00000135436 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135436 [Gene_View]  chr12:49587505-49605650 [Contig_View]  FAM186B [Vega]
ICGC DataPortalENSG00000135436
TCGA cBioPortalFAM186B
AceView (NCBI)FAM186B
Genatlas (Paris)FAM186B
WikiGenes84070
SOURCE (Princeton)FAM186B
Genetics Home Reference (NIH)FAM186B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM186B  -     chr12:49587505-49605650 -  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM186B  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblFAM186B - 12q13.12 [CytoView hg19]  FAM186B - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBIFAM186B [Mapview hg19]  FAM186B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI829695 AK093242 AK302702 AL136748 AL713673
RefSeq transcript (Entrez)NM_032130
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM186B
Cluster EST : UnigeneHs.524406 [ NCBI ]
CGAP (NCI)Hs.524406
Alternative Splicing GalleryENSG00000135436
Gene ExpressionFAM186B [ NCBI-GEO ]   FAM186B [ EBI - ARRAY_EXPRESS ]   FAM186B [ SEEK ]   FAM186B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM186B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84070
GTEX Portal (Tissue expression)FAM186B
Human Protein AtlasENSG00000135436-FAM186B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYM0
Splice isoforms : SwissVarQ8IYM0
PhosPhoSitePlusQ8IYM0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM186B
DMDM Disease mutations84070
Blocks (Seattle)FAM186B
SuperfamilyQ8IYM0
Human Protein Atlas [tissue]ENSG00000135436-FAM186B [tissue]
Peptide AtlasQ8IYM0
HPRD08535
IPIIPI00217802   IPI01014964   IPI01022303   IPI00984939   IPI00797620   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYM0
IntAct (EBI)Q8IYM0
FunCoupENSG00000135436
BioGRIDFAM186B
STRING (EMBL)FAM186B
ZODIACFAM186B
Ontologies - Pathways
QuickGOQ8IYM0
Ontology : AmiGOprotein complex  
Ontology : EGO-EBIprotein complex  
NDEx NetworkFAM186B
Atlas of Cancer Signalling NetworkFAM186B
Wikipedia pathwaysFAM186B
Orthology - Evolution
OrthoDB84070
GeneTree (enSembl)ENSG00000135436
Phylogenetic Trees/Animal Genes : TreeFamFAM186B
HOVERGENQ8IYM0
HOGENOMQ8IYM0
Homologs : HomoloGeneFAM186B
Homology/Alignments : Family Browser (UCSC)FAM186B
Gene fusions - Rearrangements
Fusion: Tumor Portal FAM186B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM186B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM186B
dbVarFAM186B
ClinVarFAM186B
1000_GenomesFAM186B 
Exome Variant ServerFAM186B
ExAC (Exome Aggregation Consortium)ENSG00000135436
GNOMAD BrowserENSG00000135436
Genetic variants : HAPMAP84070
Genomic Variants (DGV)FAM186B [DGVbeta]
DECIPHERFAM186B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM186B 
Mutations
ICGC Data PortalFAM186B 
TCGA Data PortalFAM186B 
Broad Tumor PortalFAM186B
OASIS PortalFAM186B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM186B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM186B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM186B
DgiDB (Drug Gene Interaction Database)FAM186B
DoCM (Curated mutations)FAM186B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM186B (select a term)
intoGenFAM186B
Cancer3DFAM186B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM186B
Genetic Testing Registry FAM186B
NextProtQ8IYM0 [Medical]
TSGene84070
GENETestsFAM186B
Target ValidationFAM186B
Huge Navigator FAM186B [HugePedia]
snp3D : Map Gene to Disease84070
BioCentury BCIQFAM186B
ClinGenFAM186B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84070
Chemical/Pharm GKB GenePA164719890
Clinical trialFAM186B
Miscellaneous
canSAR (ICR)FAM186B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM186B
EVEXFAM186B
GoPubMedFAM186B
iHOPFAM186B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:46:43 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.