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FAM187B (family with sequence similarity 187 member B)

Identity

Alias_namesTMEM162
transmembrane protein 162
family with sequence similarity 187, member B
Alias_symbol (synonym)FLJ25660
Other alias
HGNC (Hugo) FAM187B
LocusID (NCBI) 148109
Atlas_Id 63097
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35224801 and ends at 35228725 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PLEKHA1 (10q26.13) / FAM187B (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM187B   26366
Cards
Entrez_Gene (NCBI)FAM187B  148109  family with sequence similarity 187 member B
AliasesTMEM162
GeneCards (Weizmann)FAM187B
Ensembl hg19 (Hinxton)ENSG00000177558 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177558 [Gene_View]  chr19:35224801-35228725 [Contig_View]  FAM187B [Vega]
ICGC DataPortalENSG00000177558
TCGA cBioPortalFAM187B
AceView (NCBI)FAM187B
Genatlas (Paris)FAM187B
WikiGenes148109
SOURCE (Princeton)FAM187B
Genetics Home Reference (NIH)FAM187B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM187B  -     chr19:35224801-35228725 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM187B  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblFAM187B - 19q13.12 [CytoView hg19]  FAM187B - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIFAM187B [Mapview hg19]  FAM187B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098526 BC039080 BC117457 BC117459 HQ258231
RefSeq transcript (Entrez)NM_152481
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM187B
Cluster EST : UnigeneHs.128069 [ NCBI ]
CGAP (NCI)Hs.128069
Alternative Splicing GalleryENSG00000177558
Gene ExpressionFAM187B [ NCBI-GEO ]   FAM187B [ EBI - ARRAY_EXPRESS ]   FAM187B [ SEEK ]   FAM187B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM187B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148109
GTEX Portal (Tissue expression)FAM187B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17R55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17R55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17R55
Splice isoforms : SwissVarQ17R55
PhosPhoSitePlusQ17R55
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM187B
DMDM Disease mutations148109
Blocks (Seattle)FAM187B
SuperfamilyQ17R55
Human Protein AtlasENSG00000177558
Peptide AtlasQ17R55
HPRD08071
IPIIPI01013203   
Protein Interaction databases
DIP (DOE-UCLA)Q17R55
IntAct (EBI)Q17R55
FunCoupENSG00000177558
BioGRIDFAM187B
STRING (EMBL)FAM187B
ZODIACFAM187B
Ontologies - Pathways
QuickGOQ17R55
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM187B
Atlas of Cancer Signalling NetworkFAM187B
Wikipedia pathwaysFAM187B
Orthology - Evolution
OrthoDB148109
GeneTree (enSembl)ENSG00000177558
Phylogenetic Trees/Animal Genes : TreeFamFAM187B
HOVERGENQ17R55
HOGENOMQ17R55
Homologs : HomoloGeneFAM187B
Homology/Alignments : Family Browser (UCSC)FAM187B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM187B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM187B
dbVarFAM187B
ClinVarFAM187B
1000_GenomesFAM187B 
Exome Variant ServerFAM187B
ExAC (Exome Aggregation Consortium)FAM187B (select the gene name)
Genetic variants : HAPMAP148109
Genomic Variants (DGV)FAM187B [DGVbeta]
DECIPHERFAM187B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM187B 
Mutations
ICGC Data PortalFAM187B 
TCGA Data PortalFAM187B 
Broad Tumor PortalFAM187B
OASIS PortalFAM187B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM187B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM187B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM187B
DgiDB (Drug Gene Interaction Database)FAM187B
DoCM (Curated mutations)FAM187B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM187B (select a term)
intoGenFAM187B
Cancer3DFAM187B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM187B
Genetic Testing Registry FAM187B
NextProtQ17R55 [Medical]
TSGene148109
GENETestsFAM187B
Target ValidationFAM187B
Huge Navigator FAM187B [HugePedia]
snp3D : Map Gene to Disease148109
BioCentury BCIQFAM187B
ClinGenFAM187B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148109
Chemical/Pharm GKB GenePA164719910
Clinical trialFAM187B
Miscellaneous
canSAR (ICR)FAM187B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM187B
EVEXFAM187B
GoPubMedFAM187B
iHOPFAM187B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:46 CEST 2017

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