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FAM188A (family with sequence similarity 188 member A)

Identity

Alias_namesC10orf97
chromosome 10 open reading frame 97
family with sequence similarity 188, member A
Alias_symbol (synonym)FLJ13397
CARP
my042
DERP5
Other aliasMST126
MSTP126
HGNC (Hugo) FAM188A
LocusID (NCBI) 80013
Atlas_Id 43175
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 15820168 and ends at 15902532 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C4orf46 (4q32.1) / FAM188A (10p13)CAMK1D (10p13) / FAM188A (10p13)FAM188A (10p13) / CACNB2 (10p12.33)
CAMK1D 10p13 / FAM188A 10p13FAM188A 10p13 / CACNB2 10p12.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM188A   23578
Cards
Entrez_Gene (NCBI)FAM188A  80013  family with sequence similarity 188 member A
AliasesC10orf97; CARP; DERP5; MST126; 
MSTP126; my042
GeneCards (Weizmann)FAM188A
Ensembl hg19 (Hinxton)ENSG00000148481 [Gene_View]  chr10:15820168-15902532 [Contig_View]  FAM188A [Vega]
Ensembl hg38 (Hinxton)ENSG00000148481 [Gene_View]  chr10:15820168-15902532 [Contig_View]  FAM188A [Vega]
ICGC DataPortalENSG00000148481
TCGA cBioPortalFAM188A
AceView (NCBI)FAM188A
Genatlas (Paris)FAM188A
WikiGenes80013
SOURCE (Princeton)FAM188A
Genetics Home Reference (NIH)FAM188A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM188A  -     chr10:15820168-15902532 -  10p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM188A  -     10p13   [Description]    (hg38-Dec_2013)
EnsemblFAM188A - 10p13 [CytoView hg19]  FAM188A - 10p13 [CytoView hg38]
Mapping of homologs : NCBIFAM188A [Mapview hg19]  FAM188A [Mapview hg38]
OMIM611649   
Gene and transcription
Genbank (Entrez)AB014761 AF063600 AF176916 AI573091 AK023459
RefSeq transcript (Entrez)NM_001318330 NM_024948
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)FAM188A
Cluster EST : UnigeneHs.158870 [ NCBI ]
CGAP (NCI)Hs.158870
Alternative Splicing GalleryENSG00000148481
Gene ExpressionFAM188A [ NCBI-GEO ]   FAM188A [ EBI - ARRAY_EXPRESS ]   FAM188A [ SEEK ]   FAM188A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM188A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80013
GTEX Portal (Tissue expression)FAM188A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8M7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8M7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8M7
Splice isoforms : SwissVarQ9H8M7
PhosPhoSitePlusQ9H8M7
Domains : Interpro (EBI)DUF4205    EF-hand-dom_pair   
Domain families : Pfam (Sanger)DUF4205 (PF13898)   
Domain families : Pfam (NCBI)pfam13898   
Conserved Domain (NCBI)FAM188A
DMDM Disease mutations80013
Blocks (Seattle)FAM188A
SuperfamilyQ9H8M7
Human Protein AtlasENSG00000148481
Peptide AtlasQ9H8M7
HPRD10702
IPIIPI00549993   IPI00885206   IPI00644407   IPI00165121   IPI00646364   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8M7
IntAct (EBI)Q9H8M7
FunCoupENSG00000148481
BioGRIDFAM188A
STRING (EMBL)FAM188A
ZODIACFAM188A
Ontologies - Pathways
QuickGOQ9H8M7
Ontology : AmiGOprotein binding  nucleoplasm  apoptotic process  nuclear membrane  
Ontology : EGO-EBIprotein binding  nucleoplasm  apoptotic process  nuclear membrane  
NDEx NetworkFAM188A
Atlas of Cancer Signalling NetworkFAM188A
Wikipedia pathwaysFAM188A
Orthology - Evolution
OrthoDB80013
GeneTree (enSembl)ENSG00000148481
Phylogenetic Trees/Animal Genes : TreeFamFAM188A
HOVERGENQ9H8M7
HOGENOMQ9H8M7
Homologs : HomoloGeneFAM188A
Homology/Alignments : Family Browser (UCSC)FAM188A
Gene fusions - Rearrangements
Fusion : MitelmanFAM188A/CACNB2 [10p13/10p12.33]  
Fusion: TCGACAMK1D 10p13 FAM188A 10p13 BRCA
Fusion: TCGAFAM188A 10p13 CACNB2 10p12.33 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM188A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM188A
dbVarFAM188A
ClinVarFAM188A
1000_GenomesFAM188A 
Exome Variant ServerFAM188A
ExAC (Exome Aggregation Consortium)FAM188A (select the gene name)
Genetic variants : HAPMAP80013
Genomic Variants (DGV)FAM188A [DGVbeta]
DECIPHER (Syndromes)10:15820168-15902532  ENSG00000148481
CONAN: Copy Number AnalysisFAM188A 
Mutations
ICGC Data PortalFAM188A 
TCGA Data PortalFAM188A 
Broad Tumor PortalFAM188A
OASIS PortalFAM188A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM188A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM188A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM188A
DgiDB (Drug Gene Interaction Database)FAM188A
DoCM (Curated mutations)FAM188A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM188A (select a term)
intoGenFAM188A
Cancer3DFAM188A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611649   
Orphanet
MedgenFAM188A
Genetic Testing Registry FAM188A
NextProtQ9H8M7 [Medical]
TSGene80013
GENETestsFAM188A
Huge Navigator FAM188A [HugePedia]
snp3D : Map Gene to Disease80013
BioCentury BCIQFAM188A
ClinGenFAM188A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80013
Chemical/Pharm GKB GenePA165548562
Clinical trialFAM188A
Miscellaneous
canSAR (ICR)FAM188A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM188A
EVEXFAM188A
GoPubMedFAM188A
iHOPFAM188A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:27 CET 2017

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