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FAM188B (family with sequence similarity 188, member B)

Identity

Alias_namesC7orf67
chromosome 7 open reading frame 67
family with sequence similarity 188, member B
Alias_symbol (synonym)FLJ22374
Other alias
HGNC (Hugo) FAM188B
LocusID (NCBI) 84182
Atlas_Id 63098
Location 7p14.3  [Link to chromosome band 7p14]
Location_base_pair Starts at 30811033 and ends at 30932002 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM188B (7p14.3) / CREB5 (7p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM188B   21916
Cards
Entrez_Gene (NCBI)FAM188B  84182  family with sequence similarity 188, member B
AliasesC7orf67
GeneCards (Weizmann)FAM188B
Ensembl hg19 (Hinxton)ENSG00000106125 [Gene_View]  chr7:30811033-30932002 [Contig_View]  FAM188B [Vega]
Ensembl hg38 (Hinxton)ENSG00000106125 [Gene_View]  chr7:30811033-30932002 [Contig_View]  FAM188B [Vega]
ICGC DataPortalENSG00000106125
TCGA cBioPortalFAM188B
AceView (NCBI)FAM188B
Genatlas (Paris)FAM188B
WikiGenes84182
SOURCE (Princeton)FAM188B
Genetics Home Reference (NIH)FAM188B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM188B  -     chr7:30811033-30932002 +  7p14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM188B  -     7p14.3   [Description]    (hg38-Dec_2013)
EnsemblFAM188B - 7p14.3 [CytoView hg19]  FAM188B - 7p14.3 [CytoView hg38]
Mapping of homologs : NCBIFAM188B [Mapview hg19]  FAM188B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF538962 AK026027 AK090826 AK128558 BC043210
RefSeq transcript (Entrez)NM_032222
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)FAM188B
Cluster EST : UnigeneHs.660192 [ NCBI ]
CGAP (NCI)Hs.660192
Alternative Splicing GalleryENSG00000106125
Gene ExpressionFAM188B [ NCBI-GEO ]   FAM188B [ EBI - ARRAY_EXPRESS ]   FAM188B [ SEEK ]   FAM188B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM188B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84182
GTEX Portal (Tissue expression)FAM188B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0A6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0A6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0A6
Splice isoforms : SwissVarQ4G0A6
PhosPhoSitePlusQ4G0A6
Domains : Interpro (EBI)DUF4205   
Domain families : Pfam (Sanger)DUF4205 (PF13898)   
Domain families : Pfam (NCBI)pfam13898   
Conserved Domain (NCBI)FAM188B
DMDM Disease mutations84182
Blocks (Seattle)FAM188B
SuperfamilyQ4G0A6
Human Protein AtlasENSG00000106125
Peptide AtlasQ4G0A6
HPRD13387
IPIIPI00396306   IPI00916741   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0A6
IntAct (EBI)Q4G0A6
FunCoupENSG00000106125
BioGRIDFAM188B
STRING (EMBL)FAM188B
ZODIACFAM188B
Ontologies - Pathways
QuickGOQ4G0A6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM188B
Atlas of Cancer Signalling NetworkFAM188B
Wikipedia pathwaysFAM188B
Orthology - Evolution
OrthoDB84182
GeneTree (enSembl)ENSG00000106125
Phylogenetic Trees/Animal Genes : TreeFamFAM188B
HOVERGENQ4G0A6
HOGENOMQ4G0A6
Homologs : HomoloGeneFAM188B
Homology/Alignments : Family Browser (UCSC)FAM188B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM188B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM188B
dbVarFAM188B
ClinVarFAM188B
1000_GenomesFAM188B 
Exome Variant ServerFAM188B
ExAC (Exome Aggregation Consortium)FAM188B (select the gene name)
Genetic variants : HAPMAP84182
Genomic Variants (DGV)FAM188B [DGVbeta]
DECIPHER (Syndromes)7:30811033-30932002  ENSG00000106125
CONAN: Copy Number AnalysisFAM188B 
Mutations
ICGC Data PortalFAM188B 
TCGA Data PortalFAM188B 
Broad Tumor PortalFAM188B
OASIS PortalFAM188B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM188B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM188B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM188B
DgiDB (Drug Gene Interaction Database)FAM188B
DoCM (Curated mutations)FAM188B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM188B (select a term)
intoGenFAM188B
Cancer3DFAM188B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM188B
Genetic Testing Registry FAM188B
NextProtQ4G0A6 [Medical]
TSGene84182
GENETestsFAM188B
Huge Navigator FAM188B [HugePedia]
snp3D : Map Gene to Disease84182
BioCentury BCIQFAM188B
ClinGenFAM188B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84182
Chemical/Pharm GKB GenePA165618038
Clinical trialFAM188B
Miscellaneous
canSAR (ICR)FAM188B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM188B
EVEXFAM188B
GoPubMedFAM188B
iHOPFAM188B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:46 CET 2017

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