Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM188B2 (family with sequence similarity 188, member B2)

Identity

Alias_namesC3orf76
chromosome 3 open reading frame 76
family with sequence similarity 188, member B2
Other aliasCLRN1
HGNC (Hugo) FAM188B2
LocusID (NCBI) 646951
Atlas_Id 63099
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 150600784 and ends at 150659530 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)FAM188B2   35475
Cards
Entrez_Gene (NCBI)FAM188B2  646951  family with sequence similarity 188, member B2
AliasesC3orf76; CLRN1
GeneCards (Weizmann)FAM188B2
Ensembl hg19 (Hinxton) [Gene_View]  chr3:150600784-150659530 [Contig_View]  FAM188B2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:150600784-150659530 [Contig_View]  FAM188B2 [Vega]
TCGA cBioPortalFAM188B2
AceView (NCBI)FAM188B2
Genatlas (Paris)FAM188B2
WikiGenes646951
SOURCE (Princeton)FAM188B2
Genetics Home Reference (NIH)FAM188B2
Genomic and cartography
GoldenPath hg19 (UCSC)FAM188B2  -     chr3:150600784-150659530 -  3q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM188B2  -     3q25.1   [Description]    (hg38-Dec_2013)
EnsemblFAM188B2 - 3q25.1 [CytoView hg19]  FAM188B2 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBIFAM188B2 [Mapview hg19]  FAM188B2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)HM626137 HM626138 HM626139
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)AC_000135 NC_000003 NT_005612 NW_001838884
Consensus coding sequences : CCDS (NCBI)FAM188B2
Cluster EST : UnigeneHs.745448 [ NCBI ]
CGAP (NCI)Hs.745448
Gene ExpressionFAM188B2 [ NCBI-GEO ]   FAM188B2 [ EBI - ARRAY_EXPRESS ]   FAM188B2 [ SEEK ]   FAM188B2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM188B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646951
GTEX Portal (Tissue expression)FAM188B2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MYZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MYZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MYZ0
Splice isoforms : SwissVarA8MYZ0
PhosPhoSitePlusA8MYZ0
Domains : Interpro (EBI)DUF4205   
Domain families : Pfam (Sanger)DUF4205 (PF13898)   
Domain families : Pfam (NCBI)pfam13898   
Conserved Domain (NCBI)FAM188B2
DMDM Disease mutations646951
Blocks (Seattle)FAM188B2
SuperfamilyA8MYZ0
Peptide AtlasA8MYZ0
IPIIPI00738323   
Protein Interaction databases
DIP (DOE-UCLA)A8MYZ0
IntAct (EBI)A8MYZ0
BioGRIDFAM188B2
STRING (EMBL)FAM188B2
ZODIACFAM188B2
Ontologies - Pathways
QuickGOA8MYZ0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM188B2
Atlas of Cancer Signalling NetworkFAM188B2
Wikipedia pathwaysFAM188B2
Orthology - Evolution
OrthoDB646951
Phylogenetic Trees/Animal Genes : TreeFamFAM188B2
HOVERGENA8MYZ0
HOGENOMA8MYZ0
Homologs : HomoloGeneFAM188B2
Homology/Alignments : Family Browser (UCSC)FAM188B2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM188B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM188B2
dbVarFAM188B2
ClinVarFAM188B2
1000_GenomesFAM188B2 
Exome Variant ServerFAM188B2
ExAC (Exome Aggregation Consortium)FAM188B2 (select the gene name)
Genetic variants : HAPMAP646951
Genomic Variants (DGV)FAM188B2 [DGVbeta]
DECIPHER (Syndromes)3:150600784-150659530  
CONAN: Copy Number AnalysisFAM188B2 
Mutations
ICGC Data PortalFAM188B2 
TCGA Data PortalFAM188B2 
Broad Tumor PortalFAM188B2
OASIS PortalFAM188B2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM188B2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM188B2
BioMutasearch FAM188B2
DgiDB (Drug Gene Interaction Database)FAM188B2
DoCM (Curated mutations)FAM188B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM188B2 (select a term)
intoGenFAM188B2
Cancer3DFAM188B2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM188B2
Genetic Testing Registry FAM188B2
NextProtA8MYZ0 [Medical]
TSGene646951
GENETestsFAM188B2
Huge Navigator FAM188B2 [HugePedia]
snp3D : Map Gene to Disease646951
BioCentury BCIQFAM188B2
ClinGenFAM188B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646951
Chemical/Pharm GKB GenePA165697258
Clinical trialFAM188B2
Miscellaneous
canSAR (ICR)FAM188B2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM188B2
EVEXFAM188B2
GoPubMedFAM188B2
iHOPFAM188B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:03:46 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.