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FAM189A1 (family with sequence similarity 189 member A1)

Identity

Alias (NCBI)TMEM228
HGNC (Hugo) FAM189A1
HGNC Alias symbKIAA0574
TMEM228
HGNC Alias nametransmembrane protein 228
HGNC Previous namefamily with sequence similarity 189, member A1
LocusID (NCBI) 23359
Atlas_Id 63100
Location 15q13.1  [Link to chromosome band 15q13]
Location_base_pair Starts at 29120252 and ends at 29570723 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TJP1 (15q13.1) / FAM189A1 (15q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FAM189A1   29075
Cards
Entrez_Gene (NCBI)FAM189A1    family with sequence similarity 189 member A1
AliasesTMEM228
GeneCards (Weizmann)FAM189A1
Ensembl hg19 (Hinxton)ENSG00000104059 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104059 [Gene_View]  ENSG00000104059 [Sequence]  chr15:29120252-29570723 [Contig_View]  FAM189A1 [Vega]
ICGC DataPortalENSG00000104059
TCGA cBioPortalFAM189A1
AceView (NCBI)FAM189A1
Genatlas (Paris)FAM189A1
SOURCE (Princeton)FAM189A1
Genetics Home Reference (NIH)FAM189A1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM189A1  -     chr15:29120252-29570723 -  15q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM189A1  -     15q13.1   [Description]    (hg19-Feb_2009)
GoldenPathFAM189A1 - 15q13.1 [CytoView hg19]  FAM189A1 - 15q13.1 [CytoView hg38]
ImmunoBaseENSG00000104059
Genome Data Viewer NCBIFAM189A1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB011146 AI364989 AK295622 BC127817 DA188047
RefSeq transcript (Entrez)NM_001387214 NM_001387215 NM_001387216 NM_001387217 NM_015307
Consensus coding sequences : CCDS (NCBI)FAM189A1
Gene ExpressionFAM189A1 [ NCBI-GEO ]   FAM189A1 [ EBI - ARRAY_EXPRESS ]   FAM189A1 [ SEEK ]   FAM189A1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM189A1 [ Firebrowse - Broad ]
GenevisibleExpression of FAM189A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23359
GTEX Portal (Tissue expression)FAM189A1
Human Protein AtlasENSG00000104059-FAM189A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60320   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60320  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60320
PhosPhoSitePlusO60320
Domains : Interpro (EBI)CD20-like    FAM189   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)FAM189A1
SuperfamilyO60320
AlphaFold pdb e-kbO60320   
Human Protein Atlas [tissue]ENSG00000104059-FAM189A1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O60320
IntAct (EBI)O60320
BioGRIDFAM189A1
STRING (EMBL)FAM189A1
ZODIACFAM189A1
Ontologies - Pathways
QuickGOO60320
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM189A1
Atlas of Cancer Signalling NetworkFAM189A1
Wikipedia pathwaysFAM189A1
Orthology - Evolution
OrthoDB23359
GeneTree (enSembl)ENSG00000104059
Phylogenetic Trees/Animal Genes : TreeFamFAM189A1
Homologs : HomoloGeneFAM189A1
Homology/Alignments : Family Browser (UCSC)FAM189A1
Gene fusions - Rearrangements
Fusion : QuiverFAM189A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM189A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM189A1
dbVarFAM189A1
ClinVarFAM189A1
MonarchFAM189A1
1000_GenomesFAM189A1 
Exome Variant ServerFAM189A1
GNOMAD BrowserENSG00000104059
Varsome BrowserFAM189A1
ACMGFAM189A1 variants
VarityO60320
Genomic Variants (DGV)FAM189A1 [DGVbeta]
DECIPHERFAM189A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM189A1 
Mutations
ICGC Data PortalFAM189A1 
TCGA Data PortalFAM189A1 
Broad Tumor PortalFAM189A1
OASIS PortalFAM189A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM189A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM189A1
Mutations and Diseases : HGMDFAM189A1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFAM189A1
DgiDB (Drug Gene Interaction Database)FAM189A1
DoCM (Curated mutations)FAM189A1
CIViC (Clinical Interpretations of Variants in Cancer)FAM189A1
Cancer3DFAM189A1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM189A1
MedgenFAM189A1
Genetic Testing Registry FAM189A1
NextProtO60320 [Medical]
GENETestsFAM189A1
Target ValidationFAM189A1
Huge Navigator FAM189A1 [HugePedia]
ClinGenFAM189A1
Clinical trials, drugs, therapy
MyCancerGenomeFAM189A1
Protein Interactions : CTDFAM189A1
Pharm GKB GenePA165478574
PharosO60320
Clinical trialFAM189A1
Miscellaneous
canSAR (ICR)FAM189A1
HarmonizomeFAM189A1
DataMed IndexFAM189A1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM189A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:49:42 CEST 2021

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