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FAM189A1 (family with sequence similarity 189, member A1)

Identity

Alias_namesfamily with sequence similarity 189, member A1
Alias_symbol (synonym)KIAA0574
TMEM228
Other alias
HGNC (Hugo) FAM189A1
LocusID (NCBI) 23359
Atlas_Id 63100
Location 15q13.1  [Link to chromosome band 15q13]
Location_base_pair Starts at 29412455 and ends at 29862927 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TJP1 (15q13.1) / FAM189A1 (15q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM189A1   29075
Cards
Entrez_Gene (NCBI)FAM189A1  23359  family with sequence similarity 189, member A1
AliasesTMEM228
GeneCards (Weizmann)FAM189A1
Ensembl hg19 (Hinxton)ENSG00000104059 [Gene_View]  chr15:29412455-29862927 [Contig_View]  FAM189A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104059 [Gene_View]  chr15:29412455-29862927 [Contig_View]  FAM189A1 [Vega]
ICGC DataPortalENSG00000104059
TCGA cBioPortalFAM189A1
AceView (NCBI)FAM189A1
Genatlas (Paris)FAM189A1
WikiGenes23359
SOURCE (Princeton)FAM189A1
Genetics Home Reference (NIH)FAM189A1
Genomic and cartography
GoldenPath hg19 (UCSC)FAM189A1  -     chr15:29412455-29862927 -  15q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM189A1  -     15q13.1   [Description]    (hg38-Dec_2013)
EnsemblFAM189A1 - 15q13.1 [CytoView hg19]  FAM189A1 - 15q13.1 [CytoView hg38]
Mapping of homologs : NCBIFAM189A1 [Mapview hg19]  FAM189A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB011146 AI364989 AK295622 BC127817 DA188047
RefSeq transcript (Entrez)NM_015307
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NT_187660 NW_004929398 NW_011332701
Consensus coding sequences : CCDS (NCBI)FAM189A1
Cluster EST : UnigeneHs.383564 [ NCBI ]
CGAP (NCI)Hs.383564
Alternative Splicing GalleryENSG00000104059
Gene ExpressionFAM189A1 [ NCBI-GEO ]   FAM189A1 [ EBI - ARRAY_EXPRESS ]   FAM189A1 [ SEEK ]   FAM189A1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM189A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23359
GTEX Portal (Tissue expression)FAM189A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60320   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60320  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60320
Splice isoforms : SwissVarO60320
PhosPhoSitePlusO60320
Domains : Interpro (EBI)CD20-like    FAM189   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)FAM189A1
DMDM Disease mutations23359
Blocks (Seattle)FAM189A1
SuperfamilyO60320
Human Protein AtlasENSG00000104059
Peptide AtlasO60320
IPIIPI00883930   IPI00028973   
Protein Interaction databases
DIP (DOE-UCLA)O60320
IntAct (EBI)O60320
FunCoupENSG00000104059
BioGRIDFAM189A1
STRING (EMBL)FAM189A1
ZODIACFAM189A1
Ontologies - Pathways
QuickGOO60320
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM189A1
Atlas of Cancer Signalling NetworkFAM189A1
Wikipedia pathwaysFAM189A1
Orthology - Evolution
OrthoDB23359
GeneTree (enSembl)ENSG00000104059
Phylogenetic Trees/Animal Genes : TreeFamFAM189A1
HOVERGENO60320
HOGENOMO60320
Homologs : HomoloGeneFAM189A1
Homology/Alignments : Family Browser (UCSC)FAM189A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM189A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM189A1
dbVarFAM189A1
ClinVarFAM189A1
1000_GenomesFAM189A1 
Exome Variant ServerFAM189A1
ExAC (Exome Aggregation Consortium)FAM189A1 (select the gene name)
Genetic variants : HAPMAP23359
Genomic Variants (DGV)FAM189A1 [DGVbeta]
DECIPHER (Syndromes)15:29412455-29862927  ENSG00000104059
CONAN: Copy Number AnalysisFAM189A1 
Mutations
ICGC Data PortalFAM189A1 
TCGA Data PortalFAM189A1 
Broad Tumor PortalFAM189A1
OASIS PortalFAM189A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM189A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM189A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM189A1
DgiDB (Drug Gene Interaction Database)FAM189A1
DoCM (Curated mutations)FAM189A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM189A1 (select a term)
intoGenFAM189A1
Cancer3DFAM189A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM189A1
Genetic Testing Registry FAM189A1
NextProtO60320 [Medical]
TSGene23359
GENETestsFAM189A1
Huge Navigator FAM189A1 [HugePedia]
snp3D : Map Gene to Disease23359
BioCentury BCIQFAM189A1
ClinGenFAM189A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23359
Chemical/Pharm GKB GenePA165478574
Clinical trialFAM189A1
Miscellaneous
canSAR (ICR)FAM189A1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM189A1
EVEXFAM189A1
GoPubMedFAM189A1
iHOPFAM189A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:46 CET 2017

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