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FAM189A2 (family with sequence similarity 189, member A2)

Identity

Alias_namesC9orf61
chromosome 9 open reading frame 61
family with sequence similarity 189, member A2
Alias_symbol (synonym)X123
HGNC (Hugo) FAM189A2
LocusID (NCBI) 9413
Atlas_Id 63101
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 71939488 and ends at 72007370 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM189A2   24820
Cards
Entrez_Gene (NCBI)FAM189A2  9413  family with sequence similarity 189, member A2
AliasesC9orf61; X123
GeneCards (Weizmann)FAM189A2
Ensembl hg19 (Hinxton)ENSG00000135063 [Gene_View]  chr9:71939488-72007370 [Contig_View]  FAM189A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000135063 [Gene_View]  chr9:71939488-72007370 [Contig_View]  FAM189A2 [Vega]
ICGC DataPortalENSG00000135063
TCGA cBioPortalFAM189A2
AceView (NCBI)FAM189A2
Genatlas (Paris)FAM189A2
WikiGenes9413
SOURCE (Princeton)FAM189A2
Genetics Home Reference (NIH)FAM189A2
Genomic and cartography
GoldenPath hg19 (UCSC)FAM189A2  -     chr9:71939488-72007370 +  9q21.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM189A2  -     9q21.11   [Description]    (hg38-Dec_2013)
EnsemblFAM189A2 - 9q21.11 [CytoView hg19]  FAM189A2 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBIFAM189A2 [Mapview hg19]  FAM189A2 [Mapview hg38]
OMIM607710   
Gene and transcription
Genbank (Entrez)AK056152 AK126127 BC021685 BC113683 BC113685
RefSeq transcript (Entrez)NM_001127608 NM_004816
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)FAM189A2
Cluster EST : UnigeneHs.118003 [ NCBI ]
CGAP (NCI)Hs.118003
Alternative Splicing GalleryENSG00000135063
Gene ExpressionFAM189A2 [ NCBI-GEO ]   FAM189A2 [ EBI - ARRAY_EXPRESS ]   FAM189A2 [ SEEK ]   FAM189A2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM189A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9413
GTEX Portal (Tissue expression)FAM189A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15884   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15884  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15884
Splice isoforms : SwissVarQ15884
PhosPhoSitePlusQ15884
Domains : Interpro (EBI)CD20-like    FAM189   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)FAM189A2
DMDM Disease mutations9413
Blocks (Seattle)FAM189A2
SuperfamilyQ15884
Human Protein AtlasENSG00000135063
Peptide AtlasQ15884
HPRD16255
IPIIPI00332058   IPI00642889   IPI00796831   IPI00425909   IPI00180417   
Protein Interaction databases
DIP (DOE-UCLA)Q15884
IntAct (EBI)Q15884
FunCoupENSG00000135063
BioGRIDFAM189A2
STRING (EMBL)FAM189A2
ZODIACFAM189A2
Ontologies - Pathways
QuickGOQ15884
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  
NDEx NetworkFAM189A2
Atlas of Cancer Signalling NetworkFAM189A2
Wikipedia pathwaysFAM189A2
Orthology - Evolution
OrthoDB9413
GeneTree (enSembl)ENSG00000135063
Phylogenetic Trees/Animal Genes : TreeFamFAM189A2
HOVERGENQ15884
HOGENOMQ15884
Homologs : HomoloGeneFAM189A2
Homology/Alignments : Family Browser (UCSC)FAM189A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM189A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM189A2
dbVarFAM189A2
ClinVarFAM189A2
1000_GenomesFAM189A2 
Exome Variant ServerFAM189A2
ExAC (Exome Aggregation Consortium)FAM189A2 (select the gene name)
Genetic variants : HAPMAP9413
Genomic Variants (DGV)FAM189A2 [DGVbeta]
DECIPHER (Syndromes)9:71939488-72007370  ENSG00000135063
CONAN: Copy Number AnalysisFAM189A2 
Mutations
ICGC Data PortalFAM189A2 
TCGA Data PortalFAM189A2 
Broad Tumor PortalFAM189A2
OASIS PortalFAM189A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM189A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM189A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM189A2
DgiDB (Drug Gene Interaction Database)FAM189A2
DoCM (Curated mutations)FAM189A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM189A2 (select a term)
intoGenFAM189A2
Cancer3DFAM189A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607710   
Orphanet
MedgenFAM189A2
Genetic Testing Registry FAM189A2
NextProtQ15884 [Medical]
TSGene9413
GENETestsFAM189A2
Huge Navigator FAM189A2 [HugePedia]
snp3D : Map Gene to Disease9413
BioCentury BCIQFAM189A2
ClinGenFAM189A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9413
Chemical/Pharm GKB GenePA165585777
Clinical trialFAM189A2
Miscellaneous
canSAR (ICR)FAM189A2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM189A2
EVEXFAM189A2
GoPubMedFAM189A2
iHOPFAM189A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Dec 29 13:24:50 CET 2016

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