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FAM192A (family with sequence similarity 192 member A)

Identity

Alias_namesC16orf94
chromosome 16 open reading frame 94
family with sequence similarity 192, member A
Alias_symbol (synonym)NIP30
Other aliasCDA018
CDA10
HGNC (Hugo) FAM192A
LocusID (NCBI) 80011
Atlas_Id 63102
Location 16q13  [Link to chromosome band 16q13]
Location_base_pair Starts at 57152466 and ends at 57186064 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM192A (16q13) / C16orf62 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM192A   29856
Cards
Entrez_Gene (NCBI)FAM192A  80011  family with sequence similarity 192 member A
AliasesC16orf94; CDA018; CDA10; NIP30
GeneCards (Weizmann)FAM192A
Ensembl hg19 (Hinxton)ENSG00000172775 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172775 [Gene_View]  chr16:57152466-57186064 [Contig_View]  FAM192A [Vega]
ICGC DataPortalENSG00000172775
TCGA cBioPortalFAM192A
AceView (NCBI)FAM192A
Genatlas (Paris)FAM192A
WikiGenes80011
SOURCE (Princeton)FAM192A
Genetics Home Reference (NIH)FAM192A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM192A  -     chr16:57152466-57186064 -  16q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM192A  -     16q13   [Description]    (hg19-Feb_2009)
EnsemblFAM192A - 16q13 [CytoView hg19]  FAM192A - 16q13 [CytoView hg38]
Mapping of homologs : NCBIFAM192A [Mapview hg19]  FAM192A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF212249 AF271785 AF356585 AK023291 AK025452
RefSeq transcript (Entrez)NM_024946
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM192A
Cluster EST : UnigeneHs.396740 [ NCBI ]
CGAP (NCI)Hs.396740
Alternative Splicing GalleryENSG00000172775
Gene ExpressionFAM192A [ NCBI-GEO ]   FAM192A [ EBI - ARRAY_EXPRESS ]   FAM192A [ SEEK ]   FAM192A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM192A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80011
GTEX Portal (Tissue expression)FAM192A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZU8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZU8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZU8
Splice isoforms : SwissVarQ9GZU8
PhosPhoSitePlusQ9GZU8
Domains : Interpro (EBI)FAM192A/Fyv6_N   
Domain families : Pfam (Sanger)Nefa_Nip30_N (PF10187)   
Domain families : Pfam (NCBI)pfam10187   
Conserved Domain (NCBI)FAM192A
DMDM Disease mutations80011
Blocks (Seattle)FAM192A
SuperfamilyQ9GZU8
Human Protein AtlasENSG00000172775
Peptide AtlasQ9GZU8
HPRD11389
Protein Interaction databases
DIP (DOE-UCLA)Q9GZU8
IntAct (EBI)Q9GZU8
FunCoupENSG00000172775
BioGRIDFAM192A
STRING (EMBL)FAM192A
ZODIACFAM192A
Ontologies - Pathways
QuickGOQ9GZU8
Ontology : AmiGOprotein binding  nucleus  
Ontology : EGO-EBIprotein binding  nucleus  
NDEx NetworkFAM192A
Atlas of Cancer Signalling NetworkFAM192A
Wikipedia pathwaysFAM192A
Orthology - Evolution
OrthoDB80011
GeneTree (enSembl)ENSG00000172775
Phylogenetic Trees/Animal Genes : TreeFamFAM192A
HOVERGENQ9GZU8
HOGENOMQ9GZU8
Homologs : HomoloGeneFAM192A
Homology/Alignments : Family Browser (UCSC)FAM192A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM192A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM192A
dbVarFAM192A
ClinVarFAM192A
1000_GenomesFAM192A 
Exome Variant ServerFAM192A
ExAC (Exome Aggregation Consortium)FAM192A (select the gene name)
Genetic variants : HAPMAP80011
Genomic Variants (DGV)FAM192A [DGVbeta]
DECIPHERFAM192A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM192A 
Mutations
ICGC Data PortalFAM192A 
TCGA Data PortalFAM192A 
Broad Tumor PortalFAM192A
OASIS PortalFAM192A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM192A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM192A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM192A
DgiDB (Drug Gene Interaction Database)FAM192A
DoCM (Curated mutations)FAM192A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM192A (select a term)
intoGenFAM192A
Cancer3DFAM192A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM192A
Genetic Testing Registry FAM192A
NextProtQ9GZU8 [Medical]
TSGene80011
GENETestsFAM192A
Target ValidationFAM192A
Huge Navigator FAM192A [HugePedia]
snp3D : Map Gene to Disease80011
BioCentury BCIQFAM192A
ClinGenFAM192A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80011
Chemical/Pharm GKB GenePA165450001
Clinical trialFAM192A
Miscellaneous
canSAR (ICR)FAM192A (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM192A
EVEXFAM192A
GoPubMedFAM192A
iHOPFAM192A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:07 CEST 2017

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