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FAM193A (family with sequence similarity 193 member A)

Identity

Alias_namesC4orf8
chromosome 4 open reading frame 8
family with sequence similarity 193, member A
Alias_symbol (synonym)RES4-22
Other alias
HGNC (Hugo) FAM193A
LocusID (NCBI) 8603
Atlas_Id 63103
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 2625432 and ends at 2732575 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADD1 (4p16.3) / FAM193A (4p16.3)FAM193A (4p16.3) / FAM193A (4p16.3)FAM193A (4p16.3) / SGSM2 (17p13.3)
FAM193A (4p16.3) / TNIP2 (4p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM193A   16822
Cards
Entrez_Gene (NCBI)FAM193A  8603  family with sequence similarity 193 member A
AliasesC4orf8; RES4-22
GeneCards (Weizmann)FAM193A
Ensembl hg19 (Hinxton)ENSG00000125386 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125386 [Gene_View]  chr4:2625432-2732575 [Contig_View]  FAM193A [Vega]
ICGC DataPortalENSG00000125386
TCGA cBioPortalFAM193A
AceView (NCBI)FAM193A
Genatlas (Paris)FAM193A
WikiGenes8603
SOURCE (Princeton)FAM193A
Genetics Home Reference (NIH)FAM193A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM193A  -     chr4:2625432-2732575 +  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM193A  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblFAM193A - 4p16.3 [CytoView hg19]  FAM193A - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIFAM193A [Mapview hg19]  FAM193A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA905011 AB000459 AB000460 AB000461 AB001563
RefSeq transcript (Entrez)NM_001256666 NM_001256667 NM_001256668 NM_003704
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM193A
Cluster EST : UnigeneHs.652364 [ NCBI ]
CGAP (NCI)Hs.652364
Alternative Splicing GalleryENSG00000125386
Gene ExpressionFAM193A [ NCBI-GEO ]   FAM193A [ EBI - ARRAY_EXPRESS ]   FAM193A [ SEEK ]   FAM193A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM193A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8603
GTEX Portal (Tissue expression)FAM193A
Human Protein AtlasENSG00000125386-FAM193A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78312   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78312  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78312
Splice isoforms : SwissVarP78312
PhosPhoSitePlusP78312
Domains : Interpro (EBI)FAM193    FAM193_C    FAM193A   
Domain families : Pfam (Sanger)FAM193_C (PF15914)   
Domain families : Pfam (NCBI)pfam15914   
Conserved Domain (NCBI)FAM193A
DMDM Disease mutations8603
Blocks (Seattle)FAM193A
SuperfamilyP78312
Human Protein Atlas [tissue]ENSG00000125386-FAM193A [tissue]
Peptide AtlasP78312
HPRD09850
IPIIPI00181821   IPI00607859   IPI00607686   IPI00607566   IPI00978347   IPI00963920   IPI00965282   IPI00965561   IPI00963872   
Protein Interaction databases
DIP (DOE-UCLA)P78312
IntAct (EBI)P78312
FunCoupENSG00000125386
BioGRIDFAM193A
STRING (EMBL)FAM193A
ZODIACFAM193A
Ontologies - Pathways
QuickGOP78312
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM193A
Atlas of Cancer Signalling NetworkFAM193A
Wikipedia pathwaysFAM193A
Orthology - Evolution
OrthoDB8603
GeneTree (enSembl)ENSG00000125386
Phylogenetic Trees/Animal Genes : TreeFamFAM193A
HOVERGENP78312
HOGENOMP78312
Homologs : HomoloGeneFAM193A
Homology/Alignments : Family Browser (UCSC)FAM193A
Gene fusions - Rearrangements
Fusion: Tumor Portal FAM193A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM193A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM193A
dbVarFAM193A
ClinVarFAM193A
1000_GenomesFAM193A 
Exome Variant ServerFAM193A
ExAC (Exome Aggregation Consortium)ENSG00000125386
GNOMAD BrowserENSG00000125386
Genetic variants : HAPMAP8603
Genomic Variants (DGV)FAM193A [DGVbeta]
DECIPHERFAM193A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM193A 
Mutations
ICGC Data PortalFAM193A 
TCGA Data PortalFAM193A 
Broad Tumor PortalFAM193A
OASIS PortalFAM193A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM193A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM193A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM193A
DgiDB (Drug Gene Interaction Database)FAM193A
DoCM (Curated mutations)FAM193A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM193A (select a term)
intoGenFAM193A
Cancer3DFAM193A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM193A
Genetic Testing Registry FAM193A
NextProtP78312 [Medical]
TSGene8603
GENETestsFAM193A
Target ValidationFAM193A
Huge Navigator FAM193A [HugePedia]
snp3D : Map Gene to Disease8603
BioCentury BCIQFAM193A
ClinGenFAM193A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8603
Chemical/Pharm GKB GenePA165663979
Clinical trialFAM193A
Miscellaneous
canSAR (ICR)FAM193A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM193A
EVEXFAM193A
GoPubMedFAM193A
iHOPFAM193A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:46:45 CET 2017

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