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FAM196A (family with sequence similarity 196 member A)

Identity

Alias_namesC10orf141
chromosome 10 open reading frame 141
family with sequence similarity 196, member A
Alias_symbol (synonym)FLJ45557
Other aliasINSYN2
HGNC (Hugo) FAM196A
LocusID (NCBI) 642938
Atlas_Id 63106
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 127135426 and ends at 127196158 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM196A   33859
Cards
Entrez_Gene (NCBI)FAM196A  642938  family with sequence similarity 196 member A
AliasesC10orf141; INSYN2
GeneCards (Weizmann)FAM196A
Ensembl hg19 (Hinxton)ENSG00000188916 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188916 [Gene_View]  chr10:127135426-127196158 [Contig_View]  FAM196A [Vega]
ICGC DataPortalENSG00000188916
TCGA cBioPortalFAM196A
AceView (NCBI)FAM196A
Genatlas (Paris)FAM196A
WikiGenes642938
SOURCE (Princeton)FAM196A
Genetics Home Reference (NIH)FAM196A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM196A  -     chr10:127135426-127196158 -  10q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM196A  -     10q26.2   [Description]    (hg19-Feb_2009)
EnsemblFAM196A - 10q26.2 [CytoView hg19]  FAM196A - 10q26.2 [CytoView hg38]
Mapping of homologs : NCBIFAM196A [Mapview hg19]  FAM196A [Mapview hg38]
OMIM617129   
Gene and transcription
Genbank (Entrez)AK127465 BC131825 BC137112 BC144478
RefSeq transcript (Entrez)NM_001039762
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM196A
Cluster EST : UnigeneHs.613882 [ NCBI ]
CGAP (NCI)Hs.613882
Alternative Splicing GalleryENSG00000188916
Gene ExpressionFAM196A [ NCBI-GEO ]   FAM196A [ EBI - ARRAY_EXPRESS ]   FAM196A [ SEEK ]   FAM196A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM196A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642938
GTEX Portal (Tissue expression)FAM196A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSG2
Splice isoforms : SwissVarQ6ZSG2
PhosPhoSitePlusQ6ZSG2
Domains : Interpro (EBI)FAM196   
Domain families : Pfam (Sanger)FAM196 (PF15265)   
Domain families : Pfam (NCBI)pfam15265   
Conserved Domain (NCBI)FAM196A
DMDM Disease mutations642938
Blocks (Seattle)FAM196A
SuperfamilyQ6ZSG2
Human Protein AtlasENSG00000188916
Peptide AtlasQ6ZSG2
IPIIPI00412891   IPI00922007   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSG2
IntAct (EBI)Q6ZSG2
FunCoupENSG00000188916
BioGRIDFAM196A
STRING (EMBL)FAM196A
ZODIACFAM196A
Ontologies - Pathways
QuickGOQ6ZSG2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM196A
Atlas of Cancer Signalling NetworkFAM196A
Wikipedia pathwaysFAM196A
Orthology - Evolution
OrthoDB642938
GeneTree (enSembl)ENSG00000188916
Phylogenetic Trees/Animal Genes : TreeFamFAM196A
HOVERGENQ6ZSG2
HOGENOMQ6ZSG2
Homologs : HomoloGeneFAM196A
Homology/Alignments : Family Browser (UCSC)FAM196A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM196A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM196A
dbVarFAM196A
ClinVarFAM196A
1000_GenomesFAM196A 
Exome Variant ServerFAM196A
ExAC (Exome Aggregation Consortium)FAM196A (select the gene name)
Genetic variants : HAPMAP642938
Genomic Variants (DGV)FAM196A [DGVbeta]
DECIPHERFAM196A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM196A 
Mutations
ICGC Data PortalFAM196A 
TCGA Data PortalFAM196A 
Broad Tumor PortalFAM196A
OASIS PortalFAM196A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM196A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM196A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM196A
DgiDB (Drug Gene Interaction Database)FAM196A
DoCM (Curated mutations)FAM196A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM196A (select a term)
intoGenFAM196A
Cancer3DFAM196A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617129   
Orphanet
MedgenFAM196A
Genetic Testing Registry FAM196A
NextProtQ6ZSG2 [Medical]
TSGene642938
GENETestsFAM196A
Target ValidationFAM196A
Huge Navigator FAM196A [HugePedia]
snp3D : Map Gene to Disease642938
BioCentury BCIQFAM196A
ClinGenFAM196A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642938
Chemical/Pharm GKB GenePA165548646
Clinical trialFAM196A
Miscellaneous
canSAR (ICR)FAM196A (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM196A
EVEXFAM196A
GoPubMedFAM196A
iHOPFAM196A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:07 CEST 2017

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