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FAM196B (family with sequence similarity 196, member B)

Identity

Alias_namesC5orf57
chromosome 5 open reading frame 57
family with sequence similarity 196, member B
Other alias
HGNC (Hugo) FAM196B
LocusID (NCBI) 100131897
Atlas_Id 63107
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 169290719 and ends at 169407744 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM196B   37271
Cards
Entrez_Gene (NCBI)FAM196B  100131897  family with sequence similarity 196, member B
AliasesC5orf57
GeneCards (Weizmann)FAM196B
Ensembl hg19 (Hinxton)ENSG00000204767 [Gene_View]  chr5:169290719-169407744 [Contig_View]  FAM196B [Vega]
Ensembl hg38 (Hinxton)ENSG00000204767 [Gene_View]  chr5:169290719-169407744 [Contig_View]  FAM196B [Vega]
ICGC DataPortalENSG00000204767
TCGA cBioPortalFAM196B
AceView (NCBI)FAM196B
Genatlas (Paris)FAM196B
WikiGenes100131897
SOURCE (Princeton)FAM196B
Genetics Home Reference (NIH)FAM196B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM196B  -     chr5:169290719-169407744 -  5q35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM196B  -     5q35.1   [Description]    (hg38-Dec_2013)
EnsemblFAM196B - 5q35.1 [CytoView hg19]  FAM196B - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBIFAM196B [Mapview hg19]  FAM196B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055998
RefSeq transcript (Entrez)NM_001129891
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)FAM196B
Cluster EST : UnigeneHs.721917 [ NCBI ]
CGAP (NCI)Hs.721917
Alternative Splicing GalleryENSG00000204767
Gene ExpressionFAM196B [ NCBI-GEO ]   FAM196B [ EBI - ARRAY_EXPRESS ]   FAM196B [ SEEK ]   FAM196B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM196B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131897
GTEX Portal (Tissue expression)FAM196B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMK8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMK8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMK8
Splice isoforms : SwissVarA6NMK8
PhosPhoSitePlusA6NMK8
Domains : Interpro (EBI)FAM196   
Domain families : Pfam (Sanger)FAM196 (PF15265)   
Domain families : Pfam (NCBI)pfam15265   
Conserved Domain (NCBI)FAM196B
DMDM Disease mutations100131897
Blocks (Seattle)FAM196B
SuperfamilyA6NMK8
Human Protein AtlasENSG00000204767
Peptide AtlasA6NMK8
IPIIPI00743011   
Protein Interaction databases
DIP (DOE-UCLA)A6NMK8
IntAct (EBI)A6NMK8
FunCoupENSG00000204767
BioGRIDFAM196B
STRING (EMBL)FAM196B
ZODIACFAM196B
Ontologies - Pathways
QuickGOA6NMK8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM196B
Atlas of Cancer Signalling NetworkFAM196B
Wikipedia pathwaysFAM196B
Orthology - Evolution
OrthoDB100131897
GeneTree (enSembl)ENSG00000204767
Phylogenetic Trees/Animal Genes : TreeFamFAM196B
HOVERGENA6NMK8
HOGENOMA6NMK8
Homologs : HomoloGeneFAM196B
Homology/Alignments : Family Browser (UCSC)FAM196B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM196B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM196B
dbVarFAM196B
ClinVarFAM196B
1000_GenomesFAM196B 
Exome Variant ServerFAM196B
ExAC (Exome Aggregation Consortium)FAM196B (select the gene name)
Genetic variants : HAPMAP100131897
Genomic Variants (DGV)FAM196B [DGVbeta]
DECIPHER (Syndromes)5:169290719-169407744  ENSG00000204767
CONAN: Copy Number AnalysisFAM196B 
Mutations
ICGC Data PortalFAM196B 
TCGA Data PortalFAM196B 
Broad Tumor PortalFAM196B
OASIS PortalFAM196B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM196B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM196B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM196B
DgiDB (Drug Gene Interaction Database)FAM196B
DoCM (Curated mutations)FAM196B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM196B (select a term)
intoGenFAM196B
Cancer3DFAM196B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM196B
Genetic Testing Registry FAM196B
NextProtA6NMK8 [Medical]
TSGene100131897
GENETestsFAM196B
Huge Navigator FAM196B [HugePedia]
snp3D : Map Gene to Disease100131897
BioCentury BCIQFAM196B
ClinGenFAM196B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131897
Chemical/Pharm GKB GenePA165660363
Clinical trialFAM196B
Miscellaneous
canSAR (ICR)FAM196B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM196B
EVEXFAM196B
GoPubMedFAM196B
iHOPFAM196B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:47 CET 2017

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