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FAM198A (family with sequence similarity 198 member A)

Identity

Alias_namesC3orf41
chromosome 3 open reading frame 41
family with sequence similarity 198, member A
Alias_symbol (synonym)DKFZP434B172
Other alias
HGNC (Hugo) FAM198A
LocusID (NCBI) 729085
Atlas_Id 63110
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42979267 and ends at 43057716 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM198A   24485
Cards
Entrez_Gene (NCBI)FAM198A  729085  family with sequence similarity 198 member A
AliasesC3orf41
GeneCards (Weizmann)FAM198A
Ensembl hg19 (Hinxton)ENSG00000144649 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144649 [Gene_View]  chr3:42979267-43057716 [Contig_View]  FAM198A [Vega]
ICGC DataPortalENSG00000144649
TCGA cBioPortalFAM198A
AceView (NCBI)FAM198A
Genatlas (Paris)FAM198A
WikiGenes729085
SOURCE (Princeton)FAM198A
Genetics Home Reference (NIH)FAM198A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM198A  -     chr3:42979267-43057716 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM198A  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblFAM198A - 3p22.1 [CytoView hg19]  FAM198A - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIFAM198A [Mapview hg19]  FAM198A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091001 AK311059 AK311069 AL117530 BQ006782
RefSeq transcript (Entrez)NM_001129908
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM198A
Cluster EST : UnigeneHs.729533 [ NCBI ]
CGAP (NCI)Hs.729533
Alternative Splicing GalleryENSG00000144649
Gene ExpressionFAM198A [ NCBI-GEO ]   FAM198A [ EBI - ARRAY_EXPRESS ]   FAM198A [ SEEK ]   FAM198A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM198A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729085
GTEX Portal (Tissue expression)FAM198A
Human Protein AtlasENSG00000144649-FAM198A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UFP1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UFP1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UFP1
Splice isoforms : SwissVarQ9UFP1
PhosPhoSitePlusQ9UFP1
Domains : Interpro (EBI)FAM198   
Domain families : Pfam (Sanger)FAM198 (PF15051)   
Domain families : Pfam (NCBI)pfam15051   
Conserved Domain (NCBI)FAM198A
DMDM Disease mutations729085
Blocks (Seattle)FAM198A
SuperfamilyQ9UFP1
Human Protein Atlas [tissue]ENSG00000144649-FAM198A [tissue]
Peptide AtlasQ9UFP1
IPIIPI00783114   IPI01014317   
Protein Interaction databases
DIP (DOE-UCLA)Q9UFP1
IntAct (EBI)Q9UFP1
FunCoupENSG00000144649
BioGRIDFAM198A
STRING (EMBL)FAM198A
ZODIACFAM198A
Ontologies - Pathways
QuickGOQ9UFP1
Ontology : AmiGOextracellular region  intracellular membrane-bounded organelle  
Ontology : EGO-EBIextracellular region  intracellular membrane-bounded organelle  
NDEx NetworkFAM198A
Atlas of Cancer Signalling NetworkFAM198A
Wikipedia pathwaysFAM198A
Orthology - Evolution
OrthoDB729085
GeneTree (enSembl)ENSG00000144649
Phylogenetic Trees/Animal Genes : TreeFamFAM198A
HOVERGENQ9UFP1
HOGENOMQ9UFP1
Homologs : HomoloGeneFAM198A
Homology/Alignments : Family Browser (UCSC)FAM198A
Gene fusions - Rearrangements
Tumor Fusion PortalFAM198A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM198A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM198A
dbVarFAM198A
ClinVarFAM198A
1000_GenomesFAM198A 
Exome Variant ServerFAM198A
ExAC (Exome Aggregation Consortium)ENSG00000144649
GNOMAD BrowserENSG00000144649
Genetic variants : HAPMAP729085
Genomic Variants (DGV)FAM198A [DGVbeta]
DECIPHERFAM198A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM198A 
Mutations
ICGC Data PortalFAM198A 
TCGA Data PortalFAM198A 
Broad Tumor PortalFAM198A
OASIS PortalFAM198A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM198A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM198A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM198A
DgiDB (Drug Gene Interaction Database)FAM198A
DoCM (Curated mutations)FAM198A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM198A (select a term)
intoGenFAM198A
Cancer3DFAM198A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM198A
MedgenFAM198A
Genetic Testing Registry FAM198A
NextProtQ9UFP1 [Medical]
TSGene729085
GENETestsFAM198A
Target ValidationFAM198A
Huge Navigator FAM198A [HugePedia]
snp3D : Map Gene to Disease729085
BioCentury BCIQFAM198A
ClinGenFAM198A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729085
Chemical/Pharm GKB GenePA165697369
Clinical trialFAM198A
Miscellaneous
canSAR (ICR)FAM198A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM198A
EVEXFAM198A
GoPubMedFAM198A
iHOPFAM198A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:07:26 CET 2017

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