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FAM198B (family with sequence similarity 198 member B)

Identity

Alias_namesC4orf18
chromosome 4 open reading frame 18
family with sequence similarity 198, member B
Alias_symbol (synonym)FLJ38155
DKFZp434L142
Other aliasAD021
AD036
ENED
HGNC (Hugo) FAM198B
LocusID (NCBI) 51313
Atlas_Id 54304
Location 4q32.1  [Link to chromosome band 4q32]
Location_base_pair Starts at 158124580 and ends at 158173050 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANXA10 (4q32.3) / FAM198B (4q32.1)FAM198B (4q32.1) / TMEM144 (4q32.1)PALLD (4q32.3) / FAM198B (4q32.1)
ANXA10 4q32.3 / FAM198B 4q32.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM198B   25312
Cards
Entrez_Gene (NCBI)FAM198B  51313  family with sequence similarity 198 member B
AliasesAD021; AD036; C4orf18; ENED
GeneCards (Weizmann)FAM198B
Ensembl hg19 (Hinxton)ENSG00000164125 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164125 [Gene_View]  chr4:158124580-158173050 [Contig_View]  FAM198B [Vega]
ICGC DataPortalENSG00000164125
TCGA cBioPortalFAM198B
AceView (NCBI)FAM198B
Genatlas (Paris)FAM198B
WikiGenes51313
SOURCE (Princeton)FAM198B
Genetics Home Reference (NIH)FAM198B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM198B  -     chr4:158124580-158173050 -  4q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM198B  -     4q32.1   [Description]    (hg19-Feb_2009)
EnsemblFAM198B - 4q32.1 [CytoView hg19]  FAM198B - 4q32.1 [CytoView hg38]
Mapping of homologs : NCBIFAM198B [Mapview hg19]  FAM198B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF223468 AF260333 AK095474 AK172805 AK304112
RefSeq transcript (Entrez)NM_001031700 NM_001128424 NM_016613
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM198B
Cluster EST : UnigeneHs.567498 [ NCBI ]
CGAP (NCI)Hs.567498
Alternative Splicing GalleryENSG00000164125
Gene ExpressionFAM198B [ NCBI-GEO ]   FAM198B [ EBI - ARRAY_EXPRESS ]   FAM198B [ SEEK ]   FAM198B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM198B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51313
GTEX Portal (Tissue expression)FAM198B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWH4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWH4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWH4
Splice isoforms : SwissVarQ6UWH4
PhosPhoSitePlusQ6UWH4
Domains : Interpro (EBI)FAM198   
Domain families : Pfam (Sanger)FAM198 (PF15051)   
Domain families : Pfam (NCBI)pfam15051   
Conserved Domain (NCBI)FAM198B
DMDM Disease mutations51313
Blocks (Seattle)FAM198B
SuperfamilyQ6UWH4
Human Protein AtlasENSG00000164125
Peptide AtlasQ6UWH4
HPRD13194
IPIIPI00414183   IPI00165044   IPI00441925   IPI00385862   IPI00964322   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWH4
IntAct (EBI)Q6UWH4
FunCoupENSG00000164125
BioGRIDFAM198B
STRING (EMBL)FAM198B
ZODIACFAM198B
Ontologies - Pathways
QuickGOQ6UWH4
Ontology : AmiGOGolgi membrane  Golgi apparatus  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  integral component of membrane  
NDEx NetworkFAM198B
Atlas of Cancer Signalling NetworkFAM198B
Wikipedia pathwaysFAM198B
Orthology - Evolution
OrthoDB51313
GeneTree (enSembl)ENSG00000164125
Phylogenetic Trees/Animal Genes : TreeFamFAM198B
HOVERGENQ6UWH4
HOGENOMQ6UWH4
Homologs : HomoloGeneFAM198B
Homology/Alignments : Family Browser (UCSC)FAM198B
Gene fusions - Rearrangements
Fusion : MitelmanANXA10/FAM198B [4q32.3/4q32.1]  [t(4;4)(q32;q32)]  
Fusion : MitelmanFAM198B/TMEM144 [4q32.1/4q32.1]  [inv(4)(q32q32)]  
Fusion: TCGAANXA10 4q32.3 FAM198B 4q32.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM198B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM198B
dbVarFAM198B
ClinVarFAM198B
1000_GenomesFAM198B 
Exome Variant ServerFAM198B
ExAC (Exome Aggregation Consortium)FAM198B (select the gene name)
Genetic variants : HAPMAP51313
Genomic Variants (DGV)FAM198B [DGVbeta]
DECIPHERFAM198B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM198B 
Mutations
ICGC Data PortalFAM198B 
TCGA Data PortalFAM198B 
Broad Tumor PortalFAM198B
OASIS PortalFAM198B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM198B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM198B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM198B
DgiDB (Drug Gene Interaction Database)FAM198B
DoCM (Curated mutations)FAM198B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM198B (select a term)
intoGenFAM198B
Cancer3DFAM198B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM198B
Genetic Testing Registry FAM198B
NextProtQ6UWH4 [Medical]
TSGene51313
GENETestsFAM198B
Huge Navigator FAM198B [HugePedia]
snp3D : Map Gene to Disease51313
BioCentury BCIQFAM198B
ClinGenFAM198B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51313
Chemical/Pharm GKB GenePA165664058
Clinical trialFAM198B
Miscellaneous
canSAR (ICR)FAM198B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM198B
EVEXFAM198B
GoPubMedFAM198B
iHOPFAM198B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:15:23 CEST 2017

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