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FAM199X (family with sequence similarity 199, X-linked)

Identity

Alias_namesCXorf39
chromosome X open reading frame 39
Other alias
HGNC (Hugo) FAM199X
LocusID (NCBI) 139231
Atlas_Id 63111
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 104166475 and ends at 104195901 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM199X   25195
Cards
Entrez_Gene (NCBI)FAM199X  139231  family with sequence similarity 199, X-linked
AliasesCXorf39
GeneCards (Weizmann)FAM199X
Ensembl hg19 (Hinxton)ENSG00000123575 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123575 [Gene_View]  chrX:104166475-104195901 [Contig_View]  FAM199X [Vega]
ICGC DataPortalENSG00000123575
TCGA cBioPortalFAM199X
AceView (NCBI)FAM199X
Genatlas (Paris)FAM199X
WikiGenes139231
SOURCE (Princeton)FAM199X
Genetics Home Reference (NIH)FAM199X
Genomic and cartography
GoldenPath hg38 (UCSC)FAM199X  -     chrX:104166475-104195901 +  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM199X  -     Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblFAM199X - Xq22.2 [CytoView hg19]  FAM199X - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBIFAM199X [Mapview hg19]  FAM199X [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075510 AI571005 AK024844 AK091221 AK307312
RefSeq transcript (Entrez)NM_207318
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM199X
Cluster EST : UnigeneHs.496535 [ NCBI ]
CGAP (NCI)Hs.496535
Alternative Splicing GalleryENSG00000123575
Gene ExpressionFAM199X [ NCBI-GEO ]   FAM199X [ EBI - ARRAY_EXPRESS ]   FAM199X [ SEEK ]   FAM199X [ MEM ]
Gene Expression Viewer (FireBrowse)FAM199X [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139231
GTEX Portal (Tissue expression)FAM199X
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PEV8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PEV8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PEV8
Splice isoforms : SwissVarQ6PEV8
PhosPhoSitePlusQ6PEV8
Domains : Interpro (EBI)FAM199X_fam   
Domain families : Pfam (Sanger)FAM199X (PF15814)   
Domain families : Pfam (NCBI)pfam15814   
Conserved Domain (NCBI)FAM199X
DMDM Disease mutations139231
Blocks (Seattle)FAM199X
SuperfamilyQ6PEV8
Human Protein AtlasENSG00000123575
Peptide AtlasQ6PEV8
HPRD10045
IPIIPI00645906   IPI00787253   
Protein Interaction databases
DIP (DOE-UCLA)Q6PEV8
IntAct (EBI)Q6PEV8
FunCoupENSG00000123575
BioGRIDFAM199X
STRING (EMBL)FAM199X
ZODIACFAM199X
Ontologies - Pathways
QuickGOQ6PEV8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM199X
Atlas of Cancer Signalling NetworkFAM199X
Wikipedia pathwaysFAM199X
Orthology - Evolution
OrthoDB139231
GeneTree (enSembl)ENSG00000123575
Phylogenetic Trees/Animal Genes : TreeFamFAM199X
HOVERGENQ6PEV8
HOGENOMQ6PEV8
Homologs : HomoloGeneFAM199X
Homology/Alignments : Family Browser (UCSC)FAM199X
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM199X [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM199X
dbVarFAM199X
ClinVarFAM199X
1000_GenomesFAM199X 
Exome Variant ServerFAM199X
ExAC (Exome Aggregation Consortium)FAM199X (select the gene name)
Genetic variants : HAPMAP139231
Genomic Variants (DGV)FAM199X [DGVbeta]
DECIPHERFAM199X [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM199X 
Mutations
ICGC Data PortalFAM199X 
TCGA Data PortalFAM199X 
Broad Tumor PortalFAM199X
OASIS PortalFAM199X [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM199X  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM199X
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM199X
DgiDB (Drug Gene Interaction Database)FAM199X
DoCM (Curated mutations)FAM199X (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM199X (select a term)
intoGenFAM199X
Cancer3DFAM199X(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM199X
Genetic Testing Registry FAM199X
NextProtQ6PEV8 [Medical]
TSGene139231
GENETestsFAM199X
Target ValidationFAM199X
Huge Navigator FAM199X [HugePedia]
snp3D : Map Gene to Disease139231
BioCentury BCIQFAM199X
ClinGenFAM199X
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139231
Chemical/Pharm GKB GenePA165756587
Clinical trialFAM199X
Miscellaneous
canSAR (ICR)FAM199X (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM199X
EVEXFAM199X
GoPubMedFAM199X
iHOPFAM199X
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:49 CEST 2017

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