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FAM19A1 (family with sequence similarity 19 member A1, C-C motif chemokine like)

Identity

Alias_namesfamily with sequence similarity 19 (chemokine (C-C motif)-like)
Alias_symbol (synonym)TAFA-1
Other aliasTAFA1
HGNC (Hugo) FAM19A1
LocusID (NCBI) 407738
Atlas_Id 54305
Location 3p14.1  [Link to chromosome band 3p14]
Location_base_pair Starts at 67991592 and ends at 68545620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAST (5q15) / FAM19A1 (3p14.1)COPS8 (2q37.3) / FAM19A1 (3p14.1)FAM19A1 (3p14.1) / LYST (1q42.3)
FAM19A1 (3p14.1) / SUCLG2 (3p14.1)SACM1L (3p21.31) / FAM19A1 (3p14.1)SLC25A26 (3p14.1) / FAM19A1 (3p14.1)
SLC25A26 3p14.1 / FAM19A1 3p14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM19A1   21587
Cards
Entrez_Gene (NCBI)FAM19A1  407738  family with sequence similarity 19 member A1, C-C motif chemokine like
AliasesTAFA-1; TAFA1
GeneCards (Weizmann)FAM19A1
Ensembl hg19 (Hinxton)ENSG00000183662 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183662 [Gene_View]  chr3:67991592-68545620 [Contig_View]  FAM19A1 [Vega]
ICGC DataPortalENSG00000183662
TCGA cBioPortalFAM19A1
AceView (NCBI)FAM19A1
Genatlas (Paris)FAM19A1
WikiGenes407738
SOURCE (Princeton)FAM19A1
Genetics Home Reference (NIH)FAM19A1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM19A1  -     chr3:67991592-68545620 +  3p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM19A1  -     3p14.1   [Description]    (hg19-Feb_2009)
EnsemblFAM19A1 - 3p14.1 [CytoView hg19]  FAM19A1 - 3p14.1 [CytoView hg38]
Mapping of homologs : NCBIFAM19A1 [Mapview hg19]  FAM19A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK289668 AK290446 AL713702 AM393859 AY325114
RefSeq transcript (Entrez)NM_001252216 NM_213609
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM19A1
Cluster EST : UnigeneHs.731727 [ NCBI ]
CGAP (NCI)Hs.731727
Alternative Splicing GalleryENSG00000183662
Gene ExpressionFAM19A1 [ NCBI-GEO ]   FAM19A1 [ EBI - ARRAY_EXPRESS ]   FAM19A1 [ SEEK ]   FAM19A1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM19A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)407738
GTEX Portal (Tissue expression)FAM19A1
Human Protein AtlasENSG00000183662-FAM19A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5A9
Splice isoforms : SwissVarQ7Z5A9
PhosPhoSitePlusQ7Z5A9
Domains : Interpro (EBI)Chemokine-like_FAM19A2   
Domain families : Pfam (Sanger)TAFA (PF12020)   
Domain families : Pfam (NCBI)pfam12020   
Domain structure : Prodom (Prabi Lyon)Chemokine-like_2FAM19A2 (PD298472)   
Conserved Domain (NCBI)FAM19A1
DMDM Disease mutations407738
Blocks (Seattle)FAM19A1
SuperfamilyQ7Z5A9
Human Protein Atlas [tissue]ENSG00000183662-FAM19A1 [tissue]
Peptide AtlasQ7Z5A9
HPRD13294
IPIIPI00456604   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5A9
IntAct (EBI)Q7Z5A9
FunCoupENSG00000183662
BioGRIDFAM19A1
STRING (EMBL)FAM19A1
ZODIACFAM19A1
Ontologies - Pathways
QuickGOQ7Z5A9
Ontology : AmiGOprotein binding  extracellular region  endoplasmic reticulum  
Ontology : EGO-EBIprotein binding  extracellular region  endoplasmic reticulum  
NDEx NetworkFAM19A1
Atlas of Cancer Signalling NetworkFAM19A1
Wikipedia pathwaysFAM19A1
Orthology - Evolution
OrthoDB407738
GeneTree (enSembl)ENSG00000183662
Phylogenetic Trees/Animal Genes : TreeFamFAM19A1
HOVERGENQ7Z5A9
HOGENOMQ7Z5A9
Homologs : HomoloGeneFAM19A1
Homology/Alignments : Family Browser (UCSC)FAM19A1
Gene fusions - Rearrangements
Fusion : MitelmanCAST/FAM19A1 [5q15/3p14.1]  [t(3;5)(p14;q15)]  
Fusion : MitelmanSLC25A26/FAM19A1 [3p14.1/3p14.1]  [t(3;3)(p14;p14)]  
Fusion: TCGA_MDACCSLC25A26 3p14.1 FAM19A1 3p14.1 KIRC
Tumor Fusion PortalFAM19A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM19A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM19A1
dbVarFAM19A1
ClinVarFAM19A1
1000_GenomesFAM19A1 
Exome Variant ServerFAM19A1
ExAC (Exome Aggregation Consortium)ENSG00000183662
GNOMAD BrowserENSG00000183662
Genetic variants : HAPMAP407738
Genomic Variants (DGV)FAM19A1 [DGVbeta]
DECIPHERFAM19A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM19A1 
Mutations
ICGC Data PortalFAM19A1 
TCGA Data PortalFAM19A1 
Broad Tumor PortalFAM19A1
OASIS PortalFAM19A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM19A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM19A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM19A1
DgiDB (Drug Gene Interaction Database)FAM19A1
DoCM (Curated mutations)FAM19A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM19A1 (select a term)
intoGenFAM19A1
Cancer3DFAM19A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM19A1
MedgenFAM19A1
Genetic Testing Registry FAM19A1
NextProtQ7Z5A9 [Medical]
TSGene407738
GENETestsFAM19A1
Target ValidationFAM19A1
Huge Navigator FAM19A1 [HugePedia]
snp3D : Map Gene to Disease407738
BioCentury BCIQFAM19A1
ClinGenFAM19A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD407738
Chemical/Pharm GKB GenePA134907870
Clinical trialFAM19A1
Miscellaneous
canSAR (ICR)FAM19A1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM19A1
EVEXFAM19A1
GoPubMedFAM19A1
iHOPFAM19A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:12:43 CET 2017

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