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FAM19A2 (family with sequence similarity 19 member A2, C-C motif chemokine like)

Identity

Alias_namesfamily with sequence similarity 19 (chemokine (C-C motif)-like)
Alias_symbol (synonym)TAFA-2
Other aliasTAFA2
HGNC (Hugo) FAM19A2
LocusID (NCBI) 338811
Atlas_Id 54306
Location 12q14.1  [Link to chromosome band 12q14]
Location_base_pair Starts at 61708248 and ends at 62192839 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTDSP2 (12q14.1) / FAM19A2 (12q14.1)FAM19A2 (12q14.1) / KCNMB4 (12q15)PPM1H (12q14.1) / FAM19A2 (12q14.1)
RAB12 (18p11.22) / FAM19A2 (12q14.1)FAM19A2 12q14.1 / KCNMB4 12q15PPM1H 12q14.1 / FAM19A2 12q14.1
RAB12 18p11.22 / FAM19A2 12q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM19A2   21589
Cards
Entrez_Gene (NCBI)FAM19A2  338811  family with sequence similarity 19 member A2, C-C motif chemokine like
AliasesTAFA-2; TAFA2
GeneCards (Weizmann)FAM19A2
Ensembl hg19 (Hinxton)ENSG00000198673 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198673 [Gene_View]  chr12:61708248-62192839 [Contig_View]  FAM19A2 [Vega]
ICGC DataPortalENSG00000198673
TCGA cBioPortalFAM19A2
AceView (NCBI)FAM19A2
Genatlas (Paris)FAM19A2
WikiGenes338811
SOURCE (Princeton)FAM19A2
Genetics Home Reference (NIH)FAM19A2
Genomic and cartography
GoldenPath hg38 (UCSC)FAM19A2  -     chr12:61708248-62192839 -  12q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM19A2  -     12q14.1   [Description]    (hg19-Feb_2009)
EnsemblFAM19A2 - 12q14.1 [CytoView hg19]  FAM19A2 - 12q14.1 [CytoView hg38]
Mapping of homologs : NCBIFAM19A2 [Mapview hg19]  FAM19A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123580 AK128013 AL834160 AW161831 AY325115
RefSeq transcript (Entrez)NM_178539
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM19A2
Cluster EST : UnigeneHs.604626 [ NCBI ]
CGAP (NCI)Hs.604626
Alternative Splicing GalleryENSG00000198673
Gene ExpressionFAM19A2 [ NCBI-GEO ]   FAM19A2 [ EBI - ARRAY_EXPRESS ]   FAM19A2 [ SEEK ]   FAM19A2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM19A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338811
GTEX Portal (Tissue expression)FAM19A2
Human Protein AtlasENSG00000198673-FAM19A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3H0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3H0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3H0
Splice isoforms : SwissVarQ8N3H0
PhosPhoSitePlusQ8N3H0
Domains : Interpro (EBI)Chemokine-like_FAM19A2   
Domain families : Pfam (Sanger)TAFA (PF12020)   
Domain families : Pfam (NCBI)pfam12020   
Domain structure : Prodom (Prabi Lyon)Chemokine-like_2FAM19A2 (PD298472)   
Conserved Domain (NCBI)FAM19A2
DMDM Disease mutations338811
Blocks (Seattle)FAM19A2
SuperfamilyQ8N3H0
Human Protein Atlas [tissue]ENSG00000198673-FAM19A2 [tissue]
Peptide AtlasQ8N3H0
HPRD16876
IPIIPI00166553   IPI00654642   IPI01022217   IPI01021872   IPI01022949   IPI01021065   IPI01020896   
Protein Interaction databases
DIP (DOE-UCLA)Q8N3H0
IntAct (EBI)Q8N3H0
FunCoupENSG00000198673
BioGRIDFAM19A2
STRING (EMBL)FAM19A2
ZODIACFAM19A2
Ontologies - Pathways
QuickGOQ8N3H0
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkFAM19A2
Atlas of Cancer Signalling NetworkFAM19A2
Wikipedia pathwaysFAM19A2
Orthology - Evolution
OrthoDB338811
GeneTree (enSembl)ENSG00000198673
Phylogenetic Trees/Animal Genes : TreeFamFAM19A2
HOVERGENQ8N3H0
HOGENOMQ8N3H0
Homologs : HomoloGeneFAM19A2
Homology/Alignments : Family Browser (UCSC)FAM19A2
Gene fusions - Rearrangements
Fusion : MitelmanCTDSP2/FAM19A2 [12q14.1/12q14.1]  [t(12;12)(q14;q14)]  
Fusion : MitelmanFAM19A2/KCNMB4 [12q14.1/12q15]  [t(12;12)(q14;q15)]  
Fusion : MitelmanPPM1H/FAM19A2 [12q14.1/12q14.1]  [t(12;12)(q14;q14)]  
Fusion : MitelmanRAB12/FAM19A2 [18p11.22/12q14.1]  [t(12;18)(q14;p11)]  
Fusion: TCGA_MDACCFAM19A2 12q14.1 KCNMB4 12q15 BRCA
Fusion: TCGA_MDACCPPM1H 12q14.1 FAM19A2 12q14.1 BRCA
Fusion: TCGA_MDACCRAB12 18p11.22 FAM19A2 12q14.1 BRCA
Tumor Fusion PortalFAM19A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM19A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM19A2
dbVarFAM19A2
ClinVarFAM19A2
1000_GenomesFAM19A2 
Exome Variant ServerFAM19A2
ExAC (Exome Aggregation Consortium)ENSG00000198673
GNOMAD BrowserENSG00000198673
Genetic variants : HAPMAP338811
Genomic Variants (DGV)FAM19A2 [DGVbeta]
DECIPHERFAM19A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM19A2 
Mutations
ICGC Data PortalFAM19A2 
TCGA Data PortalFAM19A2 
Broad Tumor PortalFAM19A2
OASIS PortalFAM19A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM19A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM19A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM19A2
DgiDB (Drug Gene Interaction Database)FAM19A2
DoCM (Curated mutations)FAM19A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM19A2 (select a term)
intoGenFAM19A2
Cancer3DFAM19A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM19A2
MedgenFAM19A2
Genetic Testing Registry FAM19A2
NextProtQ8N3H0 [Medical]
TSGene338811
GENETestsFAM19A2
Target ValidationFAM19A2
Huge Navigator FAM19A2 [HugePedia]
snp3D : Map Gene to Disease338811
BioCentury BCIQFAM19A2
ClinGenFAM19A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338811
Chemical/Pharm GKB GenePA134974674
Clinical trialFAM19A2
Miscellaneous
canSAR (ICR)FAM19A2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM19A2
EVEXFAM19A2
GoPubMedFAM19A2
iHOPFAM19A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:12:43 CET 2017

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