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FAM19A3 (family with sequence similarity 19 member A3, C-C motif chemokine like)

Identity

Alias_namesfamily with sequence similarity 19 (chemokine (C-C motif)-like), member A3
Alias_symbol (synonym)TAFA-3
Other aliasTAFA3
HGNC (Hugo) FAM19A3
LocusID (NCBI) 284467
Atlas_Id 63112
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 112720567 and ends at 112727234 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM19A3 (1p13.2) / LPP (3q28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM19A3   21590
Cards
Entrez_Gene (NCBI)FAM19A3  284467  family with sequence similarity 19 member A3, C-C motif chemokine like
AliasesTAFA-3; TAFA3
GeneCards (Weizmann)FAM19A3
Ensembl hg19 (Hinxton)ENSG00000184599 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184599 [Gene_View]  chr1:112720567-112727234 [Contig_View]  FAM19A3 [Vega]
ICGC DataPortalENSG00000184599
TCGA cBioPortalFAM19A3
AceView (NCBI)FAM19A3
Genatlas (Paris)FAM19A3
WikiGenes284467
SOURCE (Princeton)FAM19A3
Genetics Home Reference (NIH)FAM19A3
Genomic and cartography
GoldenPath hg38 (UCSC)FAM19A3  -     chr1:112720567-112727234 +  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM19A3  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblFAM19A3 - 1p13.2 [CytoView hg19]  FAM19A3 - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIFAM19A3 [Mapview hg19]  FAM19A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY325116 AY325119 BC112268 BC117479 BC143949
RefSeq transcript (Entrez)NM_001004440 NM_182759
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM19A3
Cluster EST : UnigeneHs.439116 [ NCBI ]
CGAP (NCI)Hs.439116
Alternative Splicing GalleryENSG00000184599
Gene ExpressionFAM19A3 [ NCBI-GEO ]   FAM19A3 [ EBI - ARRAY_EXPRESS ]   FAM19A3 [ SEEK ]   FAM19A3 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM19A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284467
GTEX Portal (Tissue expression)FAM19A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5A8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5A8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5A8
Splice isoforms : SwissVarQ7Z5A8
PhosPhoSitePlusQ7Z5A8
Domains : Interpro (EBI)Chemokine-like_FAM19A2   
Domain families : Pfam (Sanger)TAFA (PF12020)   
Domain families : Pfam (NCBI)pfam12020   
Domain structure : Prodom (Prabi Lyon)Chemokine-like_2FAM19A2 (PD298472)   
Conserved Domain (NCBI)FAM19A3
DMDM Disease mutations284467
Blocks (Seattle)FAM19A3
SuperfamilyQ7Z5A8
Human Protein AtlasENSG00000184599
Peptide AtlasQ7Z5A8
HPRD16877
IPIIPI00465258   IPI00385233   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5A8
IntAct (EBI)Q7Z5A8
FunCoupENSG00000184599
BioGRIDFAM19A3
STRING (EMBL)FAM19A3
ZODIACFAM19A3
Ontologies - Pathways
QuickGOQ7Z5A8
Ontology : AmiGOextracellular space  negative regulation of microglial cell activation  positive regulation of microglial cell activation  
Ontology : EGO-EBIextracellular space  negative regulation of microglial cell activation  positive regulation of microglial cell activation  
NDEx NetworkFAM19A3
Atlas of Cancer Signalling NetworkFAM19A3
Wikipedia pathwaysFAM19A3
Orthology - Evolution
OrthoDB284467
GeneTree (enSembl)ENSG00000184599
Phylogenetic Trees/Animal Genes : TreeFamFAM19A3
HOVERGENQ7Z5A8
HOGENOMQ7Z5A8
Homologs : HomoloGeneFAM19A3
Homology/Alignments : Family Browser (UCSC)FAM19A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM19A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM19A3
dbVarFAM19A3
ClinVarFAM19A3
1000_GenomesFAM19A3 
Exome Variant ServerFAM19A3
ExAC (Exome Aggregation Consortium)FAM19A3 (select the gene name)
Genetic variants : HAPMAP284467
Genomic Variants (DGV)FAM19A3 [DGVbeta]
DECIPHERFAM19A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM19A3 
Mutations
ICGC Data PortalFAM19A3 
TCGA Data PortalFAM19A3 
Broad Tumor PortalFAM19A3
OASIS PortalFAM19A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM19A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM19A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM19A3
DgiDB (Drug Gene Interaction Database)FAM19A3
DoCM (Curated mutations)FAM19A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM19A3 (select a term)
intoGenFAM19A3
Cancer3DFAM19A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM19A3
Genetic Testing Registry FAM19A3
NextProtQ7Z5A8 [Medical]
TSGene284467
GENETestsFAM19A3
Target ValidationFAM19A3
Huge Navigator FAM19A3 [HugePedia]
snp3D : Map Gene to Disease284467
BioCentury BCIQFAM19A3
ClinGenFAM19A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284467
Chemical/Pharm GKB GenePA134899352
Clinical trialFAM19A3
Miscellaneous
canSAR (ICR)FAM19A3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM19A3
EVEXFAM19A3
GoPubMedFAM19A3
iHOPFAM19A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:49 CEST 2017

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