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FAM19A4 (family with sequence similarity 19 (chemokine (C-C motif)-like), member A4)

Identity

Alias_namesfamily with sequence similarity 19 (chemokine (C-C motif)-like)
Alias_symbol (synonym)TAFA-4
Other aliasTAFA4
HGNC (Hugo) FAM19A4
LocusID (NCBI) 151647
Atlas_Id 55341
Location 3p14.1  [Link to chromosome band 3p14]
Location_base_pair Starts at 68780915 and ends at 68981761 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM19A4 (3p14.1) / CACNA2D3 (3p21.1)FHIT (3p14.2) / FAM19A4 (3p14.1)FAM19A4 3p14.1 / CACNA2D3 3p21.1
FHIT 3p14.2 / FAM19A4 3p14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM19A4   21591
Cards
Entrez_Gene (NCBI)FAM19A4  151647  family with sequence similarity 19 (chemokine (C-C motif)-like), member A4
AliasesTAFA-4; TAFA4
GeneCards (Weizmann)FAM19A4
Ensembl hg19 (Hinxton)ENSG00000163377 [Gene_View]  chr3:68780915-68981761 [Contig_View]  FAM19A4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163377 [Gene_View]  chr3:68780915-68981761 [Contig_View]  FAM19A4 [Vega]
ICGC DataPortalENSG00000163377
TCGA cBioPortalFAM19A4
AceView (NCBI)FAM19A4
Genatlas (Paris)FAM19A4
WikiGenes151647
SOURCE (Princeton)FAM19A4
Genetics Home Reference (NIH)FAM19A4
Genomic and cartography
GoldenPath hg19 (UCSC)FAM19A4  -     chr3:68780915-68981761 -  3p14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM19A4  -     3p14.1   [Description]    (hg38-Dec_2013)
EnsemblFAM19A4 - 3p14.1 [CytoView hg19]  FAM19A4 - 3p14.1 [CytoView hg38]
Mapping of homologs : NCBIFAM19A4 [Mapview hg19]  FAM19A4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057890 AY325117 BC031566 DA017279 JF432861
RefSeq transcript (Entrez)NM_001005527 NM_182522
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929310
Consensus coding sequences : CCDS (NCBI)FAM19A4
Cluster EST : UnigeneHs.736925 [ NCBI ]
CGAP (NCI)Hs.736925
Alternative Splicing GalleryENSG00000163377
Gene ExpressionFAM19A4 [ NCBI-GEO ]   FAM19A4 [ EBI - ARRAY_EXPRESS ]   FAM19A4 [ SEEK ]   FAM19A4 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM19A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151647
GTEX Portal (Tissue expression)FAM19A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LR4
Splice isoforms : SwissVarQ96LR4
PhosPhoSitePlusQ96LR4
Domains : Interpro (EBI)Chemokine-like_FAM19A2   
Domain families : Pfam (Sanger)TAFA (PF12020)   
Domain families : Pfam (NCBI)pfam12020   
Domain structure : Prodom (Prabi Lyon)Chemokine-like_2FAM19A2 (PD298472)   
Conserved Domain (NCBI)FAM19A4
DMDM Disease mutations151647
Blocks (Seattle)FAM19A4
SuperfamilyQ96LR4
Human Protein AtlasENSG00000163377
Peptide AtlasQ96LR4
HPRD08343
IPIIPI00065186   IPI00945666   
Protein Interaction databases
DIP (DOE-UCLA)Q96LR4
IntAct (EBI)Q96LR4
FunCoupENSG00000163377
BioGRIDFAM19A4
STRING (EMBL)FAM19A4
ZODIACFAM19A4
Ontologies - Pathways
QuickGOQ96LR4
Ontology : AmiGOprotein binding  extracellular region  regulation of membrane potential  regulation of sensory perception of pain  
Ontology : EGO-EBIprotein binding  extracellular region  regulation of membrane potential  regulation of sensory perception of pain  
NDEx NetworkFAM19A4
Atlas of Cancer Signalling NetworkFAM19A4
Wikipedia pathwaysFAM19A4
Orthology - Evolution
OrthoDB151647
GeneTree (enSembl)ENSG00000163377
Phylogenetic Trees/Animal Genes : TreeFamFAM19A4
HOVERGENQ96LR4
HOGENOMQ96LR4
Homologs : HomoloGeneFAM19A4
Homology/Alignments : Family Browser (UCSC)FAM19A4
Gene fusions - Rearrangements
Fusion : MitelmanFAM19A4/CACNA2D3 [3p14.1/3p21.1]  
Fusion : MitelmanFHIT/FAM19A4 [3p14.2/3p14.1]  [t(3;3)(p14;p14)]  
Fusion: TCGAFAM19A4 3p14.1 CACNA2D3 3p21.1 BRCA
Fusion: TCGAFHIT 3p14.2 FAM19A4 3p14.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM19A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM19A4
dbVarFAM19A4
ClinVarFAM19A4
1000_GenomesFAM19A4 
Exome Variant ServerFAM19A4
ExAC (Exome Aggregation Consortium)FAM19A4 (select the gene name)
Genetic variants : HAPMAP151647
Genomic Variants (DGV)FAM19A4 [DGVbeta]
DECIPHER (Syndromes)3:68780915-68981761  ENSG00000163377
CONAN: Copy Number AnalysisFAM19A4 
Mutations
ICGC Data PortalFAM19A4 
TCGA Data PortalFAM19A4 
Broad Tumor PortalFAM19A4
OASIS PortalFAM19A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM19A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM19A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM19A4
DgiDB (Drug Gene Interaction Database)FAM19A4
DoCM (Curated mutations)FAM19A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM19A4 (select a term)
intoGenFAM19A4
Cancer3DFAM19A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM19A4
Genetic Testing Registry FAM19A4
NextProtQ96LR4 [Medical]
TSGene151647
GENETestsFAM19A4
Huge Navigator FAM19A4 [HugePedia]
snp3D : Map Gene to Disease151647
BioCentury BCIQFAM19A4
ClinGenFAM19A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151647
Chemical/Pharm GKB GenePA134873006
Clinical trialFAM19A4
Miscellaneous
canSAR (ICR)FAM19A4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM19A4
EVEXFAM19A4
GoPubMedFAM19A4
iHOPFAM19A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:00:44 CEST 2017

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