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FAM19A5 (family with sequence similarity 19 member A5, C-C motif chemokine like)

Identity

Alias_namesfamily with sequence similarity 19 (chemokine (C-C motif)-like), member A5
Alias_symbol (synonym)TAFA-5
Other aliasQLLK5208
TAFA5
UNQ5208
HGNC (Hugo) FAM19A5
LocusID (NCBI) 25817
Atlas_Id 63114
Location 22q13.32  [Link to chromosome band 22q13]
Location_base_pair Starts at 48489460 and ends at 48751935 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARFGEF2 (20q13.13) / FAM19A5 (22q13.32)ASAP1 (8q24.21) / FAM19A5 (22q13.32)FAM19A5 (22q13.32) / KLC1 (14q32.33)
FAM19A5 (22q13.32) / SYNE3 (14q32.13)FAM19A5 (22q13.32) / UBE3B (12q24.11)FAM19A5 (22q13.32) / ZFP2 (5q35.3)
PI4KA (22q11.21) / FAM19A5 (22q13.32)TNRC6B (22q13.1) / FAM19A5 (22q13.32)FAM19A5 ZFP2
FAM19A5 C14orf49ARFGEF2 FAM19A5PI4KA FAM19A5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM19A5   21592
Cards
Entrez_Gene (NCBI)FAM19A5  25817  family with sequence similarity 19 member A5, C-C motif chemokine like
AliasesQLLK5208; TAFA-5; TAFA5; UNQ5208
GeneCards (Weizmann)FAM19A5
Ensembl hg19 (Hinxton)ENSG00000219438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000219438 [Gene_View]  chr22:48489460-48751935 [Contig_View]  FAM19A5 [Vega]
ICGC DataPortalENSG00000219438
TCGA cBioPortalFAM19A5
AceView (NCBI)FAM19A5
Genatlas (Paris)FAM19A5
WikiGenes25817
SOURCE (Princeton)FAM19A5
Genetics Home Reference (NIH)FAM19A5
Genomic and cartography
GoldenPath hg38 (UCSC)FAM19A5  -     chr22:48489460-48751935 +  22q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM19A5  -     22q13.32   [Description]    (hg19-Feb_2009)
EnsemblFAM19A5 - 22q13.32 [CytoView hg19]  FAM19A5 - 22q13.32 [CytoView hg38]
Mapping of homologs : NCBIFAM19A5 [Mapview hg19]  FAM19A5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131851 AK123443 AK125256 AY325118 AY358847
RefSeq transcript (Entrez)NM_001082967 NM_015381
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM19A5
Cluster EST : UnigeneHs.436854 [ NCBI ]
CGAP (NCI)Hs.436854
Alternative Splicing GalleryENSG00000219438
Gene ExpressionFAM19A5 [ NCBI-GEO ]   FAM19A5 [ EBI - ARRAY_EXPRESS ]   FAM19A5 [ SEEK ]   FAM19A5 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM19A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25817
GTEX Portal (Tissue expression)FAM19A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5A7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5A7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5A7
Splice isoforms : SwissVarQ7Z5A7
PhosPhoSitePlusQ7Z5A7
Domains : Interpro (EBI)Chemokine-like_FAM19A2   
Domain families : Pfam (Sanger)TAFA (PF12020)   
Domain families : Pfam (NCBI)pfam12020   
Domain structure : Prodom (Prabi Lyon)Chemokine-like_2FAM19A2 (PD298472)   
Conserved Domain (NCBI)FAM19A5
DMDM Disease mutations25817
Blocks (Seattle)FAM19A5
SuperfamilyQ7Z5A7
Human Protein AtlasENSG00000219438
Peptide AtlasQ7Z5A7
HPRD13295
IPIIPI00385234   IPI00879246   IPI00879801   IPI00879498   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5A7
IntAct (EBI)Q7Z5A7
FunCoupENSG00000219438
BioGRIDFAM19A5
STRING (EMBL)FAM19A5
ZODIACFAM19A5
Ontologies - Pathways
QuickGOQ7Z5A7
Ontology : AmiGOextracellular region  integral component of membrane  
Ontology : EGO-EBIextracellular region  integral component of membrane  
NDEx NetworkFAM19A5
Atlas of Cancer Signalling NetworkFAM19A5
Wikipedia pathwaysFAM19A5
Orthology - Evolution
OrthoDB25817
GeneTree (enSembl)ENSG00000219438
Phylogenetic Trees/Animal Genes : TreeFamFAM19A5
HOVERGENQ7Z5A7
HOGENOMQ7Z5A7
Homologs : HomoloGeneFAM19A5
Homology/Alignments : Family Browser (UCSC)FAM19A5
Gene fusions - Rearrangements
Fusion: TCGAFAM19A5 ZFP2
Fusion: TCGAFAM19A5 C14orf49
Fusion: TCGAARFGEF2 FAM19A5
Fusion: TCGAPI4KA FAM19A5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM19A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM19A5
dbVarFAM19A5
ClinVarFAM19A5
1000_GenomesFAM19A5 
Exome Variant ServerFAM19A5
ExAC (Exome Aggregation Consortium)FAM19A5 (select the gene name)
Genetic variants : HAPMAP25817
Genomic Variants (DGV)FAM19A5 [DGVbeta]
DECIPHERFAM19A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM19A5 
Mutations
ICGC Data PortalFAM19A5 
TCGA Data PortalFAM19A5 
Broad Tumor PortalFAM19A5
OASIS PortalFAM19A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM19A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM19A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM19A5
DgiDB (Drug Gene Interaction Database)FAM19A5
DoCM (Curated mutations)FAM19A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM19A5 (select a term)
intoGenFAM19A5
Cancer3DFAM19A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM19A5
Genetic Testing Registry FAM19A5
NextProtQ7Z5A7 [Medical]
TSGene25817
GENETestsFAM19A5
Target ValidationFAM19A5
Huge Navigator FAM19A5 [HugePedia]
snp3D : Map Gene to Disease25817
BioCentury BCIQFAM19A5
ClinGenFAM19A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25817
Chemical/Pharm GKB GenePA134887312
Clinical trialFAM19A5
Miscellaneous
canSAR (ICR)FAM19A5 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM19A5
EVEXFAM19A5
GoPubMedFAM19A5
iHOPFAM19A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:49 CEST 2017

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