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FAM200A (family with sequence similarity 200 member A)

Identity

Alias_namesC7orf38
chromosome 7 open reading frame 38
family with sequence similarity 200, member A
Alias_symbol (synonym)FLJ36794
DKFZp727G131
Other alias
HGNC (Hugo) FAM200A
LocusID (NCBI) 221786
Atlas_Id 63115
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99546300 and ends at 99552134 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM200A   25401
Cards
Entrez_Gene (NCBI)FAM200A  221786  family with sequence similarity 200 member A
AliasesC7orf38
GeneCards (Weizmann)FAM200A
Ensembl hg19 (Hinxton)ENSG00000221909 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221909 [Gene_View]  chr7:99546300-99552134 [Contig_View]  FAM200A [Vega]
ICGC DataPortalENSG00000221909
TCGA cBioPortalFAM200A
AceView (NCBI)FAM200A
Genatlas (Paris)FAM200A
WikiGenes221786
SOURCE (Princeton)FAM200A
Genetics Home Reference (NIH)FAM200A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM200A  -     chr7:99546300-99552134 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM200A  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblFAM200A - 7q22.1 [CytoView hg19]  FAM200A - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIFAM200A [Mapview hg19]  FAM200A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024526 AK094113 AK290724 AK315452 AL713672
RefSeq transcript (Entrez)NM_145111
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM200A
Cluster EST : UnigeneHs.596587 [ NCBI ]
CGAP (NCI)Hs.596587
Alternative Splicing GalleryENSG00000221909
Gene ExpressionFAM200A [ NCBI-GEO ]   FAM200A [ EBI - ARRAY_EXPRESS ]   FAM200A [ SEEK ]   FAM200A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM200A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221786
GTEX Portal (Tissue expression)FAM200A
Human Protein AtlasENSG00000221909-FAM200A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCP9
Splice isoforms : SwissVarQ8TCP9
PhosPhoSitePlusQ8TCP9
Domains : Interpro (EBI)DUF4371    RNaseH-like_dom   
Domain families : Pfam (Sanger)DUF4371 (PF14291)   
Domain families : Pfam (NCBI)pfam14291   
Conserved Domain (NCBI)FAM200A
DMDM Disease mutations221786
Blocks (Seattle)FAM200A
SuperfamilyQ8TCP9
Human Protein Atlas [tissue]ENSG00000221909-FAM200A [tissue]
Peptide AtlasQ8TCP9
HPRD13221
IPIIPI00152399   IPI00924617   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCP9
IntAct (EBI)Q8TCP9
FunCoupENSG00000221909
BioGRIDFAM200A
STRING (EMBL)FAM200A
ZODIACFAM200A
Ontologies - Pathways
QuickGOQ8TCP9
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  integral component of membrane  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  integral component of membrane  
NDEx NetworkFAM200A
Atlas of Cancer Signalling NetworkFAM200A
Wikipedia pathwaysFAM200A
Orthology - Evolution
OrthoDB221786
GeneTree (enSembl)ENSG00000221909
Phylogenetic Trees/Animal Genes : TreeFamFAM200A
HOVERGENQ8TCP9
HOGENOMQ8TCP9
Homologs : HomoloGeneFAM200A
Homology/Alignments : Family Browser (UCSC)FAM200A
Gene fusions - Rearrangements
Tumor Fusion PortalFAM200A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM200A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM200A
dbVarFAM200A
ClinVarFAM200A
1000_GenomesFAM200A 
Exome Variant ServerFAM200A
ExAC (Exome Aggregation Consortium)ENSG00000221909
GNOMAD BrowserENSG00000221909
Genetic variants : HAPMAP221786
Genomic Variants (DGV)FAM200A [DGVbeta]
DECIPHERFAM200A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM200A 
Mutations
ICGC Data PortalFAM200A 
TCGA Data PortalFAM200A 
Broad Tumor PortalFAM200A
OASIS PortalFAM200A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM200A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM200A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM200A
DgiDB (Drug Gene Interaction Database)FAM200A
DoCM (Curated mutations)FAM200A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM200A (select a term)
intoGenFAM200A
Cancer3DFAM200A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM200A
MedgenFAM200A
Genetic Testing Registry FAM200A
NextProtQ8TCP9 [Medical]
TSGene221786
GENETestsFAM200A
Target ValidationFAM200A
Huge Navigator FAM200A [HugePedia]
snp3D : Map Gene to Disease221786
BioCentury BCIQFAM200A
ClinGenFAM200A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221786
Chemical/Pharm GKB GenePA165618089
Clinical trialFAM200A
Miscellaneous
canSAR (ICR)FAM200A (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM200A
EVEXFAM200A
GoPubMedFAM200A
iHOPFAM200A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:16:04 CET 2017

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