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FAM200B (family with sequence similarity 200 member B)

Identity

Alias_namesfamily with sequence similarity 200, member B
Alias_symbol (synonym)C4orf53
Other alias
HGNC (Hugo) FAM200B
LocusID (NCBI) 285550
Atlas_Id 63116
Location 4p15.32  [Link to chromosome band 4p15]
Location_base_pair Starts at 15681729 and ends at 15690447 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM200B   27740
Cards
Entrez_Gene (NCBI)FAM200B  285550  family with sequence similarity 200 member B
AliasesC4orf53
GeneCards (Weizmann)FAM200B
Ensembl hg19 (Hinxton)ENSG00000237765 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237765 [Gene_View]  chr4:15681729-15690447 [Contig_View]  FAM200B [Vega]
ICGC DataPortalENSG00000237765
TCGA cBioPortalFAM200B
AceView (NCBI)FAM200B
Genatlas (Paris)FAM200B
WikiGenes285550
SOURCE (Princeton)FAM200B
Genetics Home Reference (NIH)FAM200B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM200B  -     chr4:15681729-15690447 +  4p15.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM200B  -     4p15.32   [Description]    (hg19-Feb_2009)
EnsemblFAM200B - 4p15.32 [CytoView hg19]  FAM200B - 4p15.32 [CytoView hg38]
Mapping of homologs : NCBIFAM200B [Mapview hg19]  FAM200B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124651 BC017971 BC035074 BC048993 BQ004196
RefSeq transcript (Entrez)NM_001145191
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM200B
Cluster EST : UnigeneHs.731718 [ NCBI ]
CGAP (NCI)Hs.731718
Alternative Splicing GalleryENSG00000237765
Gene ExpressionFAM200B [ NCBI-GEO ]   FAM200B [ EBI - ARRAY_EXPRESS ]   FAM200B [ SEEK ]   FAM200B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM200B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285550
GTEX Portal (Tissue expression)FAM200B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CF97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CF97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CF97
Splice isoforms : SwissVarP0CF97
PhosPhoSitePlusP0CF97
Domains : Interpro (EBI)RNaseH-like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM200B
DMDM Disease mutations285550
Blocks (Seattle)FAM200B
SuperfamilyP0CF97
Human Protein AtlasENSG00000237765
Peptide AtlasP0CF97
IPIIPI00922234   IPI00964257   
Protein Interaction databases
DIP (DOE-UCLA)P0CF97
IntAct (EBI)P0CF97
FunCoupENSG00000237765
BioGRIDFAM200B
STRING (EMBL)FAM200B
ZODIACFAM200B
Ontologies - Pathways
QuickGOP0CF97
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  
NDEx NetworkFAM200B
Atlas of Cancer Signalling NetworkFAM200B
Wikipedia pathwaysFAM200B
Orthology - Evolution
OrthoDB285550
GeneTree (enSembl)ENSG00000237765
Phylogenetic Trees/Animal Genes : TreeFamFAM200B
HOVERGENP0CF97
HOGENOMP0CF97
Homologs : HomoloGeneFAM200B
Homology/Alignments : Family Browser (UCSC)FAM200B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM200B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM200B
dbVarFAM200B
ClinVarFAM200B
1000_GenomesFAM200B 
Exome Variant ServerFAM200B
ExAC (Exome Aggregation Consortium)FAM200B (select the gene name)
Genetic variants : HAPMAP285550
Genomic Variants (DGV)FAM200B [DGVbeta]
DECIPHERFAM200B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM200B 
Mutations
ICGC Data PortalFAM200B 
TCGA Data PortalFAM200B 
Broad Tumor PortalFAM200B
OASIS PortalFAM200B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM200B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM200B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM200B
DgiDB (Drug Gene Interaction Database)FAM200B
DoCM (Curated mutations)FAM200B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM200B (select a term)
intoGenFAM200B
Cancer3DFAM200B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM200B
Genetic Testing Registry FAM200B
NextProtP0CF97 [Medical]
TSGene285550
GENETestsFAM200B
Target ValidationFAM200B
Huge Navigator FAM200B [HugePedia]
snp3D : Map Gene to Disease285550
BioCentury BCIQFAM200B
ClinGenFAM200B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285550
Chemical/Pharm GKB GenePA165664101
Clinical trialFAM200B
Miscellaneous
canSAR (ICR)FAM200B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM200B
EVEXFAM200B
GoPubMedFAM200B
iHOPFAM200B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:50 CEST 2017

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