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FAM201A (family with sequence similarity 201 member A)

Identity

Alias_namesC9orf122
chromosome 9 open reading frame 122
family with sequence similarity 201, member A
Other alias
HGNC (Hugo) FAM201A
LocusID (NCBI) 158228
Atlas_Id 63117
Location 9p13.1  [Link to chromosome band 9p13]
Location_base_pair Starts at 38621088 and ends at 38623280 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
B4GALT1 (9p21.1) / FAM201A (9p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM201A   27239
Cards
Entrez_Gene (NCBI)FAM201A  158228  family with sequence similarity 201 member A
AliasesC9orf122
GeneCards (Weizmann)FAM201A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:38621088-38623280 [Contig_View]  FAM201A [Vega]
TCGA cBioPortalFAM201A
AceView (NCBI)FAM201A
Genatlas (Paris)FAM201A
WikiGenes158228
SOURCE (Princeton)FAM201A
Genetics Home Reference (NIH)FAM201A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM201A  -     chr9:38621088-38623280 +  9p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM201A  -     9p13.1   [Description]    (hg19-Feb_2009)
EnsemblFAM201A - 9p13.1 [CytoView hg19]  FAM201A - 9p13.1 [CytoView hg38]
Mapping of homologs : NCBIFAM201A [Mapview hg19]  FAM201A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036230 BC041970 BC067887
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM201A
Cluster EST : UnigeneHs.632652 [ NCBI ]
CGAP (NCI)Hs.632652
Gene ExpressionFAM201A [ NCBI-GEO ]   FAM201A [ EBI - ARRAY_EXPRESS ]   FAM201A [ SEEK ]   FAM201A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM201A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158228
GTEX Portal (Tissue expression)FAM201A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SY85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SY85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SY85
Splice isoforms : SwissVarQ5SY85
PhosPhoSitePlusQ5SY85
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM201A
DMDM Disease mutations158228
Blocks (Seattle)FAM201A
SuperfamilyQ5SY85
Peptide AtlasQ5SY85
IPIIPI00402688   
Protein Interaction databases
DIP (DOE-UCLA)Q5SY85
IntAct (EBI)Q5SY85
BioGRIDFAM201A
STRING (EMBL)FAM201A
ZODIACFAM201A
Ontologies - Pathways
QuickGOQ5SY85
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM201A
Atlas of Cancer Signalling NetworkFAM201A
Wikipedia pathwaysFAM201A
Orthology - Evolution
OrthoDB158228
Phylogenetic Trees/Animal Genes : TreeFamFAM201A
HOVERGENQ5SY85
HOGENOMQ5SY85
Homologs : HomoloGeneFAM201A
Homology/Alignments : Family Browser (UCSC)FAM201A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM201A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM201A
dbVarFAM201A
ClinVarFAM201A
1000_GenomesFAM201A 
Exome Variant ServerFAM201A
ExAC (Exome Aggregation Consortium)FAM201A (select the gene name)
Genetic variants : HAPMAP158228
Genomic Variants (DGV)FAM201A [DGVbeta]
DECIPHERFAM201A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM201A 
Mutations
ICGC Data PortalFAM201A 
TCGA Data PortalFAM201A 
Broad Tumor PortalFAM201A
OASIS PortalFAM201A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM201A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM201A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM201A
DgiDB (Drug Gene Interaction Database)FAM201A
DoCM (Curated mutations)FAM201A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM201A (select a term)
intoGenFAM201A
Cancer3DFAM201A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM201A
Genetic Testing Registry FAM201A
NextProtQ5SY85 [Medical]
TSGene158228
GENETestsFAM201A
Target ValidationFAM201A
Huge Navigator FAM201A [HugePedia]
snp3D : Map Gene to Disease158228
BioCentury BCIQFAM201A
ClinGenFAM201A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158228
Chemical/Pharm GKB GenePA165585805
Clinical trialFAM201A
Miscellaneous
canSAR (ICR)FAM201A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM201A
EVEXFAM201A
GoPubMedFAM201A
iHOPFAM201A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:10 CEST 2017

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