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FAM205BP (transmembrane protein C9orf144B pseudogene)

Identity

Alias_namesC9orf144
FAM205B
chromosome 9 open reading frame 144
family with sequence similarity 205, member B
family with sequence similarity 205, member B, pseudogene
Alias_symbol (synonym)DKFZp434J193
C9orf144A
Other alias
HGNC (Hugo) FAM205BP
LocusID (NCBI) 389715
Atlas_Id 63121
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34832645 and ends at 34838586 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM205BP   24504
Cards
Entrez_Gene (NCBI)FAM205BP  389715  transmembrane protein C9orf144B pseudogene
AliasesC9orf144; C9orf144A; FAM205B
GeneCards (Weizmann)FAM205BP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:34832645-34838586 [Contig_View]  FAM205BP [Vega]
TCGA cBioPortalFAM205BP
AceView (NCBI)FAM205BP
Genatlas (Paris)FAM205BP
WikiGenes389715
SOURCE (Princeton)FAM205BP
Genetics Home Reference (NIH)FAM205BP
Genomic and cartography
GoldenPath hg38 (UCSC)FAM205BP  -     chr9:34832645-34838586 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM205BP  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblFAM205BP - 9p13.3 [CytoView hg19]  FAM205BP - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIFAM205BP [Mapview hg19]  FAM205BP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128180 AL080137 BX648118
RefSeq transcript (Entrez)NM_001126494
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM205BP
Cluster EST : UnigeneHs.725618 [ NCBI ]
CGAP (NCI)Hs.725618
Gene ExpressionFAM205BP [ NCBI-GEO ]   FAM205BP [ EBI - ARRAY_EXPRESS ]   FAM205BP [ SEEK ]   FAM205BP [ MEM ]
Gene Expression Viewer (FireBrowse)FAM205BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389715
GTEX Portal (Tissue expression)FAM205BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ63HN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ63HN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ63HN1
Splice isoforms : SwissVarQ63HN1
PhosPhoSitePlusQ63HN1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM205BP
DMDM Disease mutations389715
Blocks (Seattle)FAM205BP
SuperfamilyQ63HN1
Peptide AtlasQ63HN1
IPIIPI00470476   IPI00478827   
Protein Interaction databases
DIP (DOE-UCLA)Q63HN1
IntAct (EBI)Q63HN1
BioGRIDFAM205BP
STRING (EMBL)FAM205BP
ZODIACFAM205BP
Ontologies - Pathways
QuickGOQ63HN1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM205BP
Atlas of Cancer Signalling NetworkFAM205BP
Wikipedia pathwaysFAM205BP
Orthology - Evolution
OrthoDB389715
Phylogenetic Trees/Animal Genes : TreeFamFAM205BP
HOVERGENQ63HN1
HOGENOMQ63HN1
Homologs : HomoloGeneFAM205BP
Homology/Alignments : Family Browser (UCSC)FAM205BP
Gene fusions - Rearrangements
Tumor Fusion PortalFAM205BP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM205BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM205BP
dbVarFAM205BP
ClinVarFAM205BP
1000_GenomesFAM205BP 
Exome Variant ServerFAM205BP
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP389715
Genomic Variants (DGV)FAM205BP [DGVbeta]
DECIPHERFAM205BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM205BP 
Mutations
ICGC Data PortalFAM205BP 
TCGA Data PortalFAM205BP 
Broad Tumor PortalFAM205BP
OASIS PortalFAM205BP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM205BP
BioMutasearch FAM205BP
DgiDB (Drug Gene Interaction Database)FAM205BP
DoCM (Curated mutations)FAM205BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM205BP (select a term)
intoGenFAM205BP
Cancer3DFAM205BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM205BP
MedgenFAM205BP
Genetic Testing Registry FAM205BP
NextProtQ63HN1 [Medical]
TSGene389715
GENETestsFAM205BP
Target ValidationFAM205BP
Huge Navigator FAM205BP [HugePedia]
snp3D : Map Gene to Disease389715
BioCentury BCIQFAM205BP
ClinGenFAM205BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389715
Chemical/Pharm GKB GenePA145149731
Clinical trialFAM205BP
Miscellaneous
canSAR (ICR)FAM205BP (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM205BP
EVEXFAM205BP
GoPubMedFAM205BP
iHOPFAM205BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:42 CET 2017

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