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FAM208A (family with sequence similarity 208 member A)

Identity

Alias_namesC3orf63
chromosome 3 open reading frame 63
family with sequence similarity 208, member A
Alias_symbol (synonym)se89-1
RAP140
KIAA1105
Other aliasTASOR
HGNC (Hugo) FAM208A
LocusID (NCBI) 23272
Atlas_Id 63124
Location 3p14.3  [Link to chromosome band 3p14]
Location_base_pair Starts at 56620132 and ends at 56683107 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM208A (3p14.3) / FAM208A (3p14.3)FAM208A (3p14.3) / PTGR2 (14q24.3)MBTPS1 (16q23.3) / FAM208A (3p14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM208A   30314
Cards
Entrez_Gene (NCBI)FAM208A  23272  family with sequence similarity 208 member A
AliasesC3orf63; RAP140; TASOR; se89-1
GeneCards (Weizmann)FAM208A
Ensembl hg19 (Hinxton)ENSG00000163946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163946 [Gene_View]  chr3:56620132-56683107 [Contig_View]  FAM208A [Vega]
ICGC DataPortalENSG00000163946
TCGA cBioPortalFAM208A
AceView (NCBI)FAM208A
Genatlas (Paris)FAM208A
WikiGenes23272
SOURCE (Princeton)FAM208A
Genetics Home Reference (NIH)FAM208A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM208A  -     chr3:56620132-56683107 -  3p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM208A  -     3p14.3   [Description]    (hg19-Feb_2009)
EnsemblFAM208A - 3p14.3 [CytoView hg19]  FAM208A - 3p14.3 [CytoView hg38]
Mapping of homologs : NCBIFAM208A [Mapview hg19]  FAM208A [Mapview hg38]
OMIM616493   
Gene and transcription
Genbank (Entrez)AB029028 AF180425 AF273053 AK094486 AK307599
RefSeq transcript (Entrez)NM_001112736 NM_015224
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM208A
Cluster EST : UnigeneHs.116877 [ NCBI ]
CGAP (NCI)Hs.116877
Alternative Splicing GalleryENSG00000163946
Gene ExpressionFAM208A [ NCBI-GEO ]   FAM208A [ EBI - ARRAY_EXPRESS ]   FAM208A [ SEEK ]   FAM208A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM208A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23272
GTEX Portal (Tissue expression)FAM208A
Human Protein AtlasENSG00000163946-FAM208A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK61
Splice isoforms : SwissVarQ9UK61
PhosPhoSitePlusQ9UK61
Domains : Interpro (EBI)DUF3715   
Domain families : Pfam (Sanger)DUF3715 (PF12509)   
Domain families : Pfam (NCBI)pfam12509   
Conserved Domain (NCBI)FAM208A
DMDM Disease mutations23272
Blocks (Seattle)FAM208A
SuperfamilyQ9UK61
Human Protein Atlas [tissue]ENSG00000163946-FAM208A [tissue]
Peptide AtlasQ9UK61
HPRD10183
IPIIPI00790098   IPI00745978   IPI00793355   IPI00796104   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK61
IntAct (EBI)Q9UK61
FunCoupENSG00000163946
BioGRIDFAM208A
STRING (EMBL)FAM208A
ZODIACFAM208A
Ontologies - Pathways
QuickGOQ9UK61
Ontology : AmiGORNA binding  nucleoplasm  chromosome  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIRNA binding  nucleoplasm  chromosome  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkFAM208A
Atlas of Cancer Signalling NetworkFAM208A
Wikipedia pathwaysFAM208A
Orthology - Evolution
OrthoDB23272
GeneTree (enSembl)ENSG00000163946
Phylogenetic Trees/Animal Genes : TreeFamFAM208A
HOVERGENQ9UK61
HOGENOMQ9UK61
Homologs : HomoloGeneFAM208A
Homology/Alignments : Family Browser (UCSC)FAM208A
Gene fusions - Rearrangements
Fusion: Tumor Portal FAM208A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM208A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM208A
dbVarFAM208A
ClinVarFAM208A
1000_GenomesFAM208A 
Exome Variant ServerFAM208A
ExAC (Exome Aggregation Consortium)ENSG00000163946
GNOMAD BrowserENSG00000163946
Genetic variants : HAPMAP23272
Genomic Variants (DGV)FAM208A [DGVbeta]
DECIPHERFAM208A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM208A 
Mutations
ICGC Data PortalFAM208A 
TCGA Data PortalFAM208A 
Broad Tumor PortalFAM208A
OASIS PortalFAM208A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM208A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM208A
BioMutasearch FAM208A
DgiDB (Drug Gene Interaction Database)FAM208A
DoCM (Curated mutations)FAM208A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM208A (select a term)
intoGenFAM208A
Cancer3DFAM208A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616493   
Orphanet
MedgenFAM208A
Genetic Testing Registry FAM208A
NextProtQ9UK61 [Medical]
TSGene23272
GENETestsFAM208A
Target ValidationFAM208A
Huge Navigator FAM208A [HugePedia]
snp3D : Map Gene to Disease23272
BioCentury BCIQFAM208A
ClinGenFAM208A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23272
Chemical/Pharm GKB GenePA128395774
Clinical trialFAM208A
Miscellaneous
canSAR (ICR)FAM208A (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM208A
EVEXFAM208A
GoPubMedFAM208A
iHOPFAM208A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:46:51 CET 2017

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