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FAM208B (family with sequence similarity 208 member B)

Identity

Alias_namesC10orf18
chromosome 10 open reading frame 18
family with sequence similarity 208, member B
Alias_symbol (synonym)FLJ20360
bA318E3.2
KIAA2006
Other alias
HGNC (Hugo) FAM208B
LocusID (NCBI) 54906
Atlas_Id 63125
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 5684838 and ends at 5763740 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM208B (10p15.1) / FAM208B (10p15.1)FAM208B (10p15.1) / NET1 (10p15.1)PFKFB3 (10p15.1) / FAM208B (10p15.1)
SLIT1 (10q24.1) / FAM208B (10p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM208B   23484
Cards
Entrez_Gene (NCBI)FAM208B  54906  family with sequence similarity 208 member B
AliasesC10orf18; bA318E3.2
GeneCards (Weizmann)FAM208B
Ensembl hg19 (Hinxton)ENSG00000108021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108021 [Gene_View]  chr10:5684838-5763740 [Contig_View]  FAM208B [Vega]
ICGC DataPortalENSG00000108021
TCGA cBioPortalFAM208B
AceView (NCBI)FAM208B
Genatlas (Paris)FAM208B
WikiGenes54906
SOURCE (Princeton)FAM208B
Genetics Home Reference (NIH)FAM208B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM208B  -     chr10:5684838-5763740 +  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM208B  -     10p15.1   [Description]    (hg19-Feb_2009)
EnsemblFAM208B - 10p15.1 [CytoView hg19]  FAM208B - 10p15.1 [CytoView hg38]
Mapping of homologs : NCBIFAM208B [Mapview hg19]  FAM208B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB095927 AB621821 AK000367 AK022966 AK024762
RefSeq transcript (Entrez)NM_001321783 NM_001321784 NM_001321785 NM_017782
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM208B
Cluster EST : UnigeneHs.694576 [ NCBI ]
CGAP (NCI)Hs.694576
Alternative Splicing GalleryENSG00000108021
Gene ExpressionFAM208B [ NCBI-GEO ]   FAM208B [ EBI - ARRAY_EXPRESS ]   FAM208B [ SEEK ]   FAM208B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM208B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54906
GTEX Portal (Tissue expression)FAM208B
Human Protein AtlasENSG00000108021-FAM208B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWN6
Splice isoforms : SwissVarQ5VWN6
PhosPhoSitePlusQ5VWN6
Domains : Interpro (EBI)DUF3699    DUF3715   
Domain families : Pfam (Sanger)DUF3699 (PF12480)    DUF3715 (PF12509)   
Domain families : Pfam (NCBI)pfam12480    pfam12509   
Conserved Domain (NCBI)FAM208B
DMDM Disease mutations54906
Blocks (Seattle)FAM208B
SuperfamilyQ5VWN6
Human Protein Atlas [tissue]ENSG00000108021-FAM208B [tissue]
Peptide AtlasQ5VWN6
IPIIPI00848276   IPI00479893   IPI00977129   IPI00973843   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWN6
IntAct (EBI)Q5VWN6
FunCoupENSG00000108021
BioGRIDFAM208B
STRING (EMBL)FAM208B
ZODIACFAM208B
Ontologies - Pathways
QuickGOQ5VWN6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM208B
Atlas of Cancer Signalling NetworkFAM208B
Wikipedia pathwaysFAM208B
Orthology - Evolution
OrthoDB54906
GeneTree (enSembl)ENSG00000108021
Phylogenetic Trees/Animal Genes : TreeFamFAM208B
HOVERGENQ5VWN6
HOGENOMQ5VWN6
Homologs : HomoloGeneFAM208B
Homology/Alignments : Family Browser (UCSC)FAM208B
Gene fusions - Rearrangements
Tumor Fusion PortalFAM208B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM208B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM208B
dbVarFAM208B
ClinVarFAM208B
1000_GenomesFAM208B 
Exome Variant ServerFAM208B
ExAC (Exome Aggregation Consortium)ENSG00000108021
GNOMAD BrowserENSG00000108021
Genetic variants : HAPMAP54906
Genomic Variants (DGV)FAM208B [DGVbeta]
DECIPHERFAM208B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM208B 
Mutations
ICGC Data PortalFAM208B 
TCGA Data PortalFAM208B 
Broad Tumor PortalFAM208B
OASIS PortalFAM208B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM208B
BioMutasearch FAM208B
DgiDB (Drug Gene Interaction Database)FAM208B
DoCM (Curated mutations)FAM208B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM208B (select a term)
intoGenFAM208B
Cancer3DFAM208B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM208B
MedgenFAM208B
Genetic Testing Registry FAM208B
NextProtQ5VWN6 [Medical]
TSGene54906
GENETestsFAM208B
Target ValidationFAM208B
Huge Navigator FAM208B [HugePedia]
snp3D : Map Gene to Disease54906
BioCentury BCIQFAM208B
ClinGenFAM208B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54906
Chemical/Pharm GKB GenePA134957890
Clinical trialFAM208B
Miscellaneous
canSAR (ICR)FAM208B (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM208B
EVEXFAM208B
GoPubMedFAM208B
iHOPFAM208B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:21:33 CET 2017

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