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FAM209A (family with sequence similarity 209 member A)

Identity

Alias_namesC20orf106
chromosome 20 open reading frame 106
family with sequence similarity 209, member A
Alias_symbol (synonym)dJ1153D9.3
Other alias
HGNC (Hugo) FAM209A
LocusID (NCBI) 200232
Atlas_Id 63126
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 56524729 and ends at 56526152 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM209A   16100
Cards
Entrez_Gene (NCBI)FAM209A  200232  family with sequence similarity 209 member A
AliasesC20orf106; dJ1153D9.3
GeneCards (Weizmann)FAM209A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:56524729-56526152 [Contig_View]  FAM209A [Vega]
TCGA cBioPortalFAM209A
AceView (NCBI)FAM209A
Genatlas (Paris)FAM209A
WikiGenes200232
SOURCE (Princeton)FAM209A
Genetics Home Reference (NIH)FAM209A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM209A  -     chr20:56524729-56526152 +  20q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM209A  -     20q13.31   [Description]    (hg19-Feb_2009)
EnsemblFAM209A - 20q13.31 [CytoView hg19]  FAM209A - 20q13.31 [CytoView hg38]
Mapping of homologs : NCBIFAM209A [Mapview hg19]  FAM209A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029411 BC070179 BC107704 BU738481 BX335293
RefSeq transcript (Entrez)NM_001012971
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM209A
Cluster EST : UnigeneHs.504907 [ NCBI ]
CGAP (NCI)Hs.504907
Gene ExpressionFAM209A [ NCBI-GEO ]   FAM209A [ EBI - ARRAY_EXPRESS ]   FAM209A [ SEEK ]   FAM209A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM209A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200232
GTEX Portal (Tissue expression)FAM209A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JX71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JX71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JX71
Splice isoforms : SwissVarQ5JX71
PhosPhoSitePlusQ5JX71
Domains : Interpro (EBI)FAM209   
Domain families : Pfam (Sanger)FAM209 (PF15206)   
Domain families : Pfam (NCBI)pfam15206   
Conserved Domain (NCBI)FAM209A
DMDM Disease mutations200232
Blocks (Seattle)FAM209A
SuperfamilyQ5JX71
Peptide AtlasQ5JX71
HPRD18536
IPIIPI00303732   
Protein Interaction databases
DIP (DOE-UCLA)Q5JX71
IntAct (EBI)Q5JX71
BioGRIDFAM209A
STRING (EMBL)FAM209A
ZODIACFAM209A
Ontologies - Pathways
QuickGOQ5JX71
Ontology : AmiGOmolecular_function  nucleus  biological_process  integral component of membrane  extracellular exosome  
Ontology : EGO-EBImolecular_function  nucleus  biological_process  integral component of membrane  extracellular exosome  
NDEx NetworkFAM209A
Atlas of Cancer Signalling NetworkFAM209A
Wikipedia pathwaysFAM209A
Orthology - Evolution
OrthoDB200232
Phylogenetic Trees/Animal Genes : TreeFamFAM209A
HOVERGENQ5JX71
HOGENOMQ5JX71
Homologs : HomoloGeneFAM209A
Homology/Alignments : Family Browser (UCSC)FAM209A
Gene fusions - Rearrangements
Tumor Fusion PortalFAM209A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM209A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM209A
dbVarFAM209A
ClinVarFAM209A
1000_GenomesFAM209A 
Exome Variant ServerFAM209A
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP200232
Genomic Variants (DGV)FAM209A [DGVbeta]
DECIPHERFAM209A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM209A 
Mutations
ICGC Data PortalFAM209A 
TCGA Data PortalFAM209A 
Broad Tumor PortalFAM209A
OASIS PortalFAM209A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM209A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM209A
DgiDB (Drug Gene Interaction Database)FAM209A
DoCM (Curated mutations)FAM209A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM209A (select a term)
intoGenFAM209A
Cancer3DFAM209A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM209A
MedgenFAM209A
Genetic Testing Registry FAM209A
NextProtQ5JX71 [Medical]
TSGene200232
GENETestsFAM209A
Target ValidationFAM209A
Huge Navigator FAM209A [HugePedia]
snp3D : Map Gene to Disease200232
BioCentury BCIQFAM209A
ClinGenFAM209A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200232
Chemical/Pharm GKB GenePA134974173
Clinical trialFAM209A
Miscellaneous
canSAR (ICR)FAM209A (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM209A
EVEXFAM209A
GoPubMedFAM209A
iHOPFAM209A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:41:28 CET 2017

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