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FAM209B (family with sequence similarity 209 member B)

Identity

Alias_namesC20orf107
chromosome 20 open reading frame 107
family with sequence similarity 209, member B
Alias_symbol (synonym)dJ1153D9.4
Other alias
HGNC (Hugo) FAM209B
LocusID (NCBI) 388799
Atlas_Id 63127
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 56533246 and ends at 56536518 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM209B   16101
Cards
Entrez_Gene (NCBI)FAM209B  388799  family with sequence similarity 209 member B
AliasesC20orf107; dJ1153D9.4
GeneCards (Weizmann)FAM209B
Ensembl hg19 (Hinxton)ENSG00000213714 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213714 [Gene_View]  chr20:56533246-56536518 [Contig_View]  FAM209B [Vega]
ICGC DataPortalENSG00000213714
TCGA cBioPortalFAM209B
AceView (NCBI)FAM209B
Genatlas (Paris)FAM209B
WikiGenes388799
SOURCE (Princeton)FAM209B
Genetics Home Reference (NIH)FAM209B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM209B  -     chr20:56533246-56536518 +  20q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM209B  -     20q13.31   [Description]    (hg19-Feb_2009)
EnsemblFAM209B - 20q13.31 [CytoView hg19]  FAM209B - 20q13.31 [CytoView hg38]
Mapping of homologs : NCBIFAM209B [Mapview hg19]  FAM209B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC014951 BC105792 DB452055 DB517586
RefSeq transcript (Entrez)NM_001013646
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM209B
Cluster EST : UnigeneHs.287759 [ NCBI ]
CGAP (NCI)Hs.287759
Alternative Splicing GalleryENSG00000213714
Gene ExpressionFAM209B [ NCBI-GEO ]   FAM209B [ EBI - ARRAY_EXPRESS ]   FAM209B [ SEEK ]   FAM209B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM209B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388799
GTEX Portal (Tissue expression)FAM209B
Human Protein AtlasENSG00000213714-FAM209B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JX69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JX69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JX69
Splice isoforms : SwissVarQ5JX69
PhosPhoSitePlusQ5JX69
Domains : Interpro (EBI)FAM209   
Domain families : Pfam (Sanger)FAM209 (PF15206)   
Domain families : Pfam (NCBI)pfam15206   
Conserved Domain (NCBI)FAM209B
DMDM Disease mutations388799
Blocks (Seattle)FAM209B
SuperfamilyQ5JX69
Human Protein Atlas [tissue]ENSG00000213714-FAM209B [tissue]
Peptide AtlasQ5JX69
HPRD18388
IPIIPI00374077   
Protein Interaction databases
DIP (DOE-UCLA)Q5JX69
IntAct (EBI)Q5JX69
FunCoupENSG00000213714
BioGRIDFAM209B
STRING (EMBL)FAM209B
ZODIACFAM209B
Ontologies - Pathways
QuickGOQ5JX69
Ontology : AmiGOnucleus  integral component of membrane  
Ontology : EGO-EBInucleus  integral component of membrane  
NDEx NetworkFAM209B
Atlas of Cancer Signalling NetworkFAM209B
Wikipedia pathwaysFAM209B
Orthology - Evolution
OrthoDB388799
GeneTree (enSembl)ENSG00000213714
Phylogenetic Trees/Animal Genes : TreeFamFAM209B
HOVERGENQ5JX69
HOGENOMQ5JX69
Homologs : HomoloGeneFAM209B
Homology/Alignments : Family Browser (UCSC)FAM209B
Gene fusions - Rearrangements
Tumor Fusion PortalFAM209B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM209B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM209B
dbVarFAM209B
ClinVarFAM209B
1000_GenomesFAM209B 
Exome Variant ServerFAM209B
ExAC (Exome Aggregation Consortium)ENSG00000213714
GNOMAD BrowserENSG00000213714
Genetic variants : HAPMAP388799
Genomic Variants (DGV)FAM209B [DGVbeta]
DECIPHERFAM209B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM209B 
Mutations
ICGC Data PortalFAM209B 
TCGA Data PortalFAM209B 
Broad Tumor PortalFAM209B
OASIS PortalFAM209B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM209B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM209B
DgiDB (Drug Gene Interaction Database)FAM209B
DoCM (Curated mutations)FAM209B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM209B (select a term)
intoGenFAM209B
Cancer3DFAM209B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM209B
MedgenFAM209B
Genetic Testing Registry FAM209B
NextProtQ5JX69 [Medical]
TSGene388799
GENETestsFAM209B
Target ValidationFAM209B
Huge Navigator FAM209B [HugePedia]
snp3D : Map Gene to Disease388799
BioCentury BCIQFAM209B
ClinGenFAM209B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388799
Chemical/Pharm GKB GenePA25646
Clinical trialFAM209B
Miscellaneous
canSAR (ICR)FAM209B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM209B
EVEXFAM209B
GoPubMedFAM209B
iHOPFAM209B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:41:28 CET 2017

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