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FAM20A (FAM20A, golgi associated secretory pathway pseudokinase)

Identity

Alias_namesfamily with sequence similarity 20, member A
Alias_symbol (synonym)DKFZp434F2322
Other aliasAI1G
AIGFS
FP2747
HGNC (Hugo) FAM20A
LocusID (NCBI) 54757
Atlas_Id 63128
Location 17q24.2  [Link to chromosome band 17q24]
Location_base_pair Starts at 68535116 and ends at 68600954 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM20A (17q24.2) / FAM20A (17q24.2)FAM20A (17q24.2) / PDE8A (15q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM20A   23015
Cards
Entrez_Gene (NCBI)FAM20A  54757  FAM20A, golgi associated secretory pathway pseudokinase
AliasesAI1G; AIGFS; FP2747
GeneCards (Weizmann)FAM20A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:68535116-68600954 [Contig_View]  FAM20A [Vega]
TCGA cBioPortalFAM20A
AceView (NCBI)FAM20A
Genatlas (Paris)FAM20A
WikiGenes54757
SOURCE (Princeton)FAM20A
Genetics Home Reference (NIH)FAM20A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM20A  -     chr17:68535116-68600954 -  17q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM20A  -     17q24.2   [Description]    (hg19-Feb_2009)
EnsemblFAM20A - 17q24.2 [CytoView hg19]  FAM20A - 17q24.2 [CytoView hg38]
Mapping of homologs : NCBIFAM20A [Mapview hg19]  FAM20A [Mapview hg38]
OMIM204690   611062   
Gene and transcription
Genbank (Entrez)AB545606 AF447872 AK056789 AK298071 AL133105
RefSeq transcript (Entrez)NM_001243746 NM_017565
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM20A
Cluster EST : UnigeneHs.268874 [ NCBI ]
CGAP (NCI)Hs.268874
Gene ExpressionFAM20A [ NCBI-GEO ]   FAM20A [ EBI - ARRAY_EXPRESS ]   FAM20A [ SEEK ]   FAM20A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM20A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54757
GTEX Portal (Tissue expression)FAM20A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MK3
Splice isoforms : SwissVarQ96MK3
PhosPhoSitePlusQ96MK3
Domains : Interpro (EBI)FAM20    FAM20_C   
Domain families : Pfam (Sanger)Fam20C (PF06702)   
Domain families : Pfam (NCBI)pfam06702   
Conserved Domain (NCBI)FAM20A
DMDM Disease mutations54757
Blocks (Seattle)FAM20A
SuperfamilyQ96MK3
Peptide AtlasQ96MK3
HPRD13296
IPIIPI00065533   IPI00434726   IPI00383554   
Protein Interaction databases
DIP (DOE-UCLA)Q96MK3
IntAct (EBI)Q96MK3
BioGRIDFAM20A
STRING (EMBL)FAM20A
ZODIACFAM20A
Ontologies - Pathways
QuickGOQ96MK3
Ontology : AmiGOpositive regulation of protein phosphorylation  positive regulation of protein phosphorylation  protein serine/threonine kinase activity  protein binding  extracellular space  cell  endoplasmic reticulum  Golgi apparatus  biomineral tissue development  protein serine/threonine kinase activator activity  tooth eruption  calcium ion homeostasis  extracellular exosome  enamel mineralization  positive regulation of protein serine/threonine kinase activity  
Ontology : EGO-EBIpositive regulation of protein phosphorylation  positive regulation of protein phosphorylation  protein serine/threonine kinase activity  protein binding  extracellular space  cell  endoplasmic reticulum  Golgi apparatus  biomineral tissue development  protein serine/threonine kinase activator activity  tooth eruption  calcium ion homeostasis  extracellular exosome  enamel mineralization  positive regulation of protein serine/threonine kinase activity  
NDEx NetworkFAM20A
Atlas of Cancer Signalling NetworkFAM20A
Wikipedia pathwaysFAM20A
Orthology - Evolution
OrthoDB54757
Phylogenetic Trees/Animal Genes : TreeFamFAM20A
HOVERGENQ96MK3
HOGENOMQ96MK3
Homologs : HomoloGeneFAM20A
Homology/Alignments : Family Browser (UCSC)FAM20A
Gene fusions - Rearrangements
Fusion: Tumor Portal FAM20A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM20A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM20A
dbVarFAM20A
ClinVarFAM20A
1000_GenomesFAM20A 
Exome Variant ServerFAM20A
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP54757
Genomic Variants (DGV)FAM20A [DGVbeta]
DECIPHERFAM20A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM20A 
Mutations
ICGC Data PortalFAM20A 
TCGA Data PortalFAM20A 
Broad Tumor PortalFAM20A
OASIS PortalFAM20A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM20A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM20A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch FAM20A
DgiDB (Drug Gene Interaction Database)FAM20A
DoCM (Curated mutations)FAM20A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM20A (select a term)
intoGenFAM20A
Cancer3DFAM20A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM204690    611062   
Orphanet17937    1339   
MedgenFAM20A
Genetic Testing Registry FAM20A
NextProtQ96MK3 [Medical]
TSGene54757
GENETestsFAM20A
Target ValidationFAM20A
Huge Navigator FAM20A [HugePedia]
snp3D : Map Gene to Disease54757
BioCentury BCIQFAM20A
ClinGenFAM20A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54757
Chemical/Pharm GKB GenePA134888583
Clinical trialFAM20A
Miscellaneous
canSAR (ICR)FAM20A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM20A
EVEXFAM20A
GoPubMedFAM20A
iHOPFAM20A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:46:51 CET 2017

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