Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM20B (FAM20B glycosaminoglycan xylosylkinase)

Identity

Alias (NCBI)gxk1
HGNC (Hugo) FAM20B
HGNC Alias symbKIAA0475
GXK1
HGNC Previous namefamily with sequence similarity 20, member B
LocusID (NCBI) 9917
Atlas_Id 63129
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 179025939 and ends at 179076567 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM20B (1q25.2) / CRK (17p13.3)FAM20B (1q25.2) / FAM20B (1q25.2)FAM20B (1q25.2) / GAS2L3 (12q23.1)
FAM20B (1q25.2) / PRSS21 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FAM20B   23017
Cards
Entrez_Gene (NCBI)FAM20B    FAM20B glycosaminoglycan xylosylkinase
Aliasesgxk1
GeneCards (Weizmann)FAM20B
Ensembl hg19 (Hinxton)ENSG00000116199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116199 [Gene_View]  ENSG00000116199 [Sequence]  chr1:179025939-179076567 [Contig_View]  FAM20B [Vega]
ICGC DataPortalENSG00000116199
TCGA cBioPortalFAM20B
AceView (NCBI)FAM20B
Genatlas (Paris)FAM20B
SOURCE (Princeton)FAM20B
Genetics Home Reference (NIH)FAM20B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM20B  -     chr1:179025939-179076567 +  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM20B  -     1q25.2   [Description]    (hg19-Feb_2009)
GoldenPathFAM20B - 1q25.2 [CytoView hg19]  FAM20B - 1q25.2 [CytoView hg38]
ImmunoBaseENSG00000116199
genome Data Viewer NCBIFAM20B [Mapview hg19]  
OMIM611063   
Gene and transcription
Genbank (Entrez)AB007944 AB480690 AK289989 BC046441 BC051794
RefSeq transcript (Entrez)NM_001324310 NM_001324311 NM_014864
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM20B
Alternative Splicing GalleryENSG00000116199
Gene ExpressionFAM20B [ NCBI-GEO ]   FAM20B [ EBI - ARRAY_EXPRESS ]   FAM20B [ SEEK ]   FAM20B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM20B [ Firebrowse - Broad ]
GenevisibleExpression of FAM20B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9917
GTEX Portal (Tissue expression)FAM20B
Human Protein AtlasENSG00000116199-FAM20B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75063   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75063  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75063
Splice isoforms : SwissVarO75063
PhosPhoSitePlusO75063
Domains : Interpro (EBI)FAM20    FAM20_C   
Domain families : Pfam (Sanger)Fam20C (PF06702)   
Domain families : Pfam (NCBI)pfam06702   
Conserved Domain (NCBI)FAM20B
Blocks (Seattle)FAM20B
SuperfamilyO75063
Human Protein Atlas [tissue]ENSG00000116199-FAM20B [tissue]
Peptide AtlasO75063
HPRD13297
IPIIPI00006657   IPI00644650   
Protein Interaction databases
DIP (DOE-UCLA)O75063
IntAct (EBI)O75063
BioGRIDFAM20B
STRING (EMBL)FAM20B
ZODIACFAM20B
Ontologies - Pathways
QuickGOO75063
Ontology : AmiGOGolgi membrane  protein binding  ATP binding  nucleoplasm  Golgi apparatus  Golgi apparatus  protein phosphorylation  integral component of membrane  kinase activity  phosphotransferase activity, alcohol group as acceptor  phosphotransferase activity, alcohol group as acceptor  proteoglycan biosynthetic process  metal ion binding  
Ontology : EGO-EBIGolgi membrane  protein binding  ATP binding  nucleoplasm  Golgi apparatus  Golgi apparatus  protein phosphorylation  integral component of membrane  kinase activity  phosphotransferase activity, alcohol group as acceptor  phosphotransferase activity, alcohol group as acceptor  proteoglycan biosynthetic process  metal ion binding  
NDEx NetworkFAM20B
Atlas of Cancer Signalling NetworkFAM20B
Wikipedia pathwaysFAM20B
Orthology - Evolution
OrthoDB9917
GeneTree (enSembl)ENSG00000116199
Phylogenetic Trees/Animal Genes : TreeFamFAM20B
HOGENOMO75063
Homologs : HomoloGeneFAM20B
Homology/Alignments : Family Browser (UCSC)FAM20B
Gene fusions - Rearrangements
Fusion : QuiverFAM20B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM20B [hg38]
dbVarFAM20B
ClinVarFAM20B
MonarchFAM20B
1000_GenomesFAM20B 
Exome Variant ServerFAM20B
GNOMAD BrowserENSG00000116199
Varsome BrowserFAM20B
Genomic Variants (DGV)FAM20B [DGVbeta]
DECIPHERFAM20B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM20B 
Mutations
ICGC Data PortalFAM20B 
TCGA Data PortalFAM20B 
Broad Tumor PortalFAM20B
OASIS PortalFAM20B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM20B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM20B
Mutations and Diseases : HGMDFAM20B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM20B
DgiDB (Drug Gene Interaction Database)FAM20B
DoCM (Curated mutations)FAM20B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM20B (select a term)
intoGenFAM20B
Cancer3DFAM20B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611063   
Orphanet
DisGeNETFAM20B
MedgenFAM20B
Genetic Testing Registry FAM20B
NextProtO75063 [Medical]
GENETestsFAM20B
Target ValidationFAM20B
Huge Navigator FAM20B [HugePedia]
ClinGenFAM20B
Clinical trials, drugs, therapy
MyCancerGenomeFAM20B
Protein Interactions : CTD
Pharm GKB GenePA134930918
Clinical trialFAM20B
Miscellaneous
canSAR (ICR)FAM20B (select the gene name)
HarmonizomeFAM20B
DataMed IndexFAM20B
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM20B
EVEXFAM20B
GoPubMedFAM20B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:53:51 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.