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FAM210B (family with sequence similarity 210 member B)

Identity

Alias_namesC20orf108
chromosome 20 open reading frame 108
family with sequence similarity 210, member B
Alias_symbol (synonym)dJ1167H4.1
DKFZP434A1114
Other alias5A3
HGNC (Hugo) FAM210B
LocusID (NCBI) 116151
Atlas_Id 63132
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 56358927 and ends at 56368662 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM210B (20q13.2) / FAM210B (20q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM210B   16102
Cards
Entrez_Gene (NCBI)FAM210B  116151  family with sequence similarity 210 member B
Aliases5A3; C20orf108; dJ1167H4.1
GeneCards (Weizmann)FAM210B
Ensembl hg19 (Hinxton)ENSG00000124098 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124098 [Gene_View]  chr20:56358927-56368662 [Contig_View]  FAM210B [Vega]
ICGC DataPortalENSG00000124098
TCGA cBioPortalFAM210B
AceView (NCBI)FAM210B
Genatlas (Paris)FAM210B
WikiGenes116151
SOURCE (Princeton)FAM210B
Genetics Home Reference (NIH)FAM210B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM210B  -     chr20:56358927-56368662 +  20q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM210B  -     20q13.2   [Description]    (hg19-Feb_2009)
EnsemblFAM210B - 20q13.2 [CytoView hg19]  FAM210B - 20q13.2 [CytoView hg38]
Mapping of homologs : NCBIFAM210B [Mapview hg19]  FAM210B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ311123 AK075565 AK314768 AL133555 BC017725
RefSeq transcript (Entrez)NM_080821
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM210B
Cluster EST : UnigeneHs.143736 [ NCBI ]
CGAP (NCI)Hs.143736
Alternative Splicing GalleryENSG00000124098
Gene ExpressionFAM210B [ NCBI-GEO ]   FAM210B [ EBI - ARRAY_EXPRESS ]   FAM210B [ SEEK ]   FAM210B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM210B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116151
GTEX Portal (Tissue expression)FAM210B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KR6
Splice isoforms : SwissVarQ96KR6
PhosPhoSitePlusQ96KR6
Domains : Interpro (EBI)DUF1279   
Domain families : Pfam (Sanger)DUF1279 (PF06916)   
Domain families : Pfam (NCBI)pfam06916   
Conserved Domain (NCBI)FAM210B
DMDM Disease mutations116151
Blocks (Seattle)FAM210B
SuperfamilyQ96KR6
Human Protein AtlasENSG00000124098
Peptide AtlasQ96KR6
HPRD12737
IPIIPI00096986   IPI00375439   
Protein Interaction databases
DIP (DOE-UCLA)Q96KR6
IntAct (EBI)Q96KR6
FunCoupENSG00000124098
BioGRIDFAM210B
STRING (EMBL)FAM210B
ZODIACFAM210B
Ontologies - Pathways
QuickGOQ96KR6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM210B
Atlas of Cancer Signalling NetworkFAM210B
Wikipedia pathwaysFAM210B
Orthology - Evolution
OrthoDB116151
GeneTree (enSembl)ENSG00000124098
Phylogenetic Trees/Animal Genes : TreeFamFAM210B
HOVERGENQ96KR6
HOGENOMQ96KR6
Homologs : HomoloGeneFAM210B
Homology/Alignments : Family Browser (UCSC)FAM210B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM210B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM210B
dbVarFAM210B
ClinVarFAM210B
1000_GenomesFAM210B 
Exome Variant ServerFAM210B
ExAC (Exome Aggregation Consortium)FAM210B (select the gene name)
Genetic variants : HAPMAP116151
Genomic Variants (DGV)FAM210B [DGVbeta]
DECIPHERFAM210B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM210B 
Mutations
ICGC Data PortalFAM210B 
TCGA Data PortalFAM210B 
Broad Tumor PortalFAM210B
OASIS PortalFAM210B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM210B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM210B
DgiDB (Drug Gene Interaction Database)FAM210B
DoCM (Curated mutations)FAM210B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM210B (select a term)
intoGenFAM210B
Cancer3DFAM210B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM210B
Genetic Testing Registry FAM210B
NextProtQ96KR6 [Medical]
TSGene116151
GENETestsFAM210B
Target ValidationFAM210B
Huge Navigator FAM210B [HugePedia]
snp3D : Map Gene to Disease116151
BioCentury BCIQFAM210B
ClinGenFAM210B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116151
Chemical/Pharm GKB GenePA25647
Clinical trialFAM210B
Miscellaneous
canSAR (ICR)FAM210B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM210B
EVEXFAM210B
GoPubMedFAM210B
iHOPFAM210B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:14 CEST 2017

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