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FAM212A (family with sequence similarity 212, member A)

Identity

Alias_namesC3orf54
chromosome 3 open reading frame 54
family with sequence similarity 212, member A
Other aliasINKA1
HGNC (Hugo) FAM212A
LocusID (NCBI) 389119
Atlas_Id 63133
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49840687 and ends at 49842463 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM212A   32480
Cards
Entrez_Gene (NCBI)FAM212A  389119  family with sequence similarity 212, member A
AliasesC3orf54; INKA1
GeneCards (Weizmann)FAM212A
Ensembl hg19 (Hinxton)ENSG00000185614 [Gene_View]  chr3:49840687-49842463 [Contig_View]  FAM212A [Vega]
Ensembl hg38 (Hinxton)ENSG00000185614 [Gene_View]  chr3:49840687-49842463 [Contig_View]  FAM212A [Vega]
ICGC DataPortalENSG00000185614
TCGA cBioPortalFAM212A
AceView (NCBI)FAM212A
Genatlas (Paris)FAM212A
WikiGenes389119
SOURCE (Princeton)FAM212A
Genetics Home Reference (NIH)FAM212A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM212A  -     chr3:49840687-49842463 +  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM212A  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblFAM212A - 3p21.31 [CytoView hg19]  FAM212A - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIFAM212A [Mapview hg19]  FAM212A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC012170 HQ448151
RefSeq transcript (Entrez)NM_203370
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)FAM212A
Cluster EST : UnigeneHs.86674 [ NCBI ]
CGAP (NCI)Hs.86674
Alternative Splicing GalleryENSG00000185614
Gene ExpressionFAM212A [ NCBI-GEO ]   FAM212A [ EBI - ARRAY_EXPRESS ]   FAM212A [ SEEK ]   FAM212A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM212A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389119
GTEX Portal (Tissue expression)FAM212A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EL1
Splice isoforms : SwissVarQ96EL1
PhosPhoSitePlusQ96EL1
Domains : Interpro (EBI)FAM212   
Domain families : Pfam (Sanger)FAM212 (PF15342)   
Domain families : Pfam (NCBI)pfam15342   
Conserved Domain (NCBI)FAM212A
DMDM Disease mutations389119
Blocks (Seattle)FAM212A
SuperfamilyQ96EL1
Human Protein AtlasENSG00000185614
Peptide AtlasQ96EL1
HPRD14210
IPIIPI00374223   
Protein Interaction databases
DIP (DOE-UCLA)Q96EL1
IntAct (EBI)Q96EL1
FunCoupENSG00000185614
BioGRIDFAM212A
STRING (EMBL)FAM212A
ZODIACFAM212A
Ontologies - Pathways
QuickGOQ96EL1
Ontology : AmiGOprotein binding  neural tube development  extracellular exosome  
Ontology : EGO-EBIprotein binding  neural tube development  extracellular exosome  
NDEx NetworkFAM212A
Atlas of Cancer Signalling NetworkFAM212A
Wikipedia pathwaysFAM212A
Orthology - Evolution
OrthoDB389119
GeneTree (enSembl)ENSG00000185614
Phylogenetic Trees/Animal Genes : TreeFamFAM212A
HOVERGENQ96EL1
HOGENOMQ96EL1
Homologs : HomoloGeneFAM212A
Homology/Alignments : Family Browser (UCSC)FAM212A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM212A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM212A
dbVarFAM212A
ClinVarFAM212A
1000_GenomesFAM212A 
Exome Variant ServerFAM212A
ExAC (Exome Aggregation Consortium)FAM212A (select the gene name)
Genetic variants : HAPMAP389119
Genomic Variants (DGV)FAM212A [DGVbeta]
DECIPHER (Syndromes)3:49840687-49842463  ENSG00000185614
CONAN: Copy Number AnalysisFAM212A 
Mutations
ICGC Data PortalFAM212A 
TCGA Data PortalFAM212A 
Broad Tumor PortalFAM212A
OASIS PortalFAM212A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM212A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM212A
DgiDB (Drug Gene Interaction Database)FAM212A
DoCM (Curated mutations)FAM212A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM212A (select a term)
intoGenFAM212A
Cancer3DFAM212A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM212A
Genetic Testing Registry FAM212A
NextProtQ96EL1 [Medical]
TSGene389119
GENETestsFAM212A
Huge Navigator FAM212A [HugePedia]
snp3D : Map Gene to Disease389119
BioCentury BCIQFAM212A
ClinGenFAM212A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389119
Chemical/Pharm GKB GenePA143485330
Clinical trialFAM212A
Miscellaneous
canSAR (ICR)FAM212A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM212A
EVEXFAM212A
GoPubMedFAM212A
iHOPFAM212A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:54 CET 2017

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