Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM213A (family with sequence similarity 213 member A)

Identity

Alias_namesC10orf58
chromosome 10 open reading frame 58
family with sequence similarity 213, member A
Alias_symbol (synonym)MGC4248
PAMM
Other aliasAdrx
HGNC (Hugo) FAM213A
LocusID (NCBI) 84293
Atlas_Id 63136
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 80413819 and ends at 80432997 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GRHL2 (8q22.3) / FAM213A (10q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM213A   28651
Cards
Entrez_Gene (NCBI)FAM213A  84293  family with sequence similarity 213 member A
AliasesAdrx; C10orf58; PAMM
GeneCards (Weizmann)FAM213A
Ensembl hg19 (Hinxton)ENSG00000122378 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122378 [Gene_View]  chr10:80413819-80432997 [Contig_View]  FAM213A [Vega]
ICGC DataPortalENSG00000122378
TCGA cBioPortalFAM213A
AceView (NCBI)FAM213A
Genatlas (Paris)FAM213A
WikiGenes84293
SOURCE (Princeton)FAM213A
Genetics Home Reference (NIH)FAM213A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM213A  -     chr10:80413819-80432997 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM213A  -     10q23.1   [Description]    (hg19-Feb_2009)
EnsemblFAM213A - 10q23.1 [CytoView hg19]  FAM213A - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBIFAM213A [Mapview hg19]  FAM213A [Mapview hg38]
OMIM617165   
Gene and transcription
Genbank (Entrez)AA829725 AF086462 AF305824 AI589570 AK022598
RefSeq transcript (Entrez)NM_001243778 NM_001243779 NM_001243780 NM_001243781 NM_001243782 NM_032333
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM213A
Cluster EST : UnigeneHs.718589 [ NCBI ]
CGAP (NCI)Hs.718589
Alternative Splicing GalleryENSG00000122378
Gene ExpressionFAM213A [ NCBI-GEO ]   FAM213A [ EBI - ARRAY_EXPRESS ]   FAM213A [ SEEK ]   FAM213A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM213A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84293
GTEX Portal (Tissue expression)FAM213A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRX8
Splice isoforms : SwissVarQ9BRX8
PhosPhoSitePlusQ9BRX8
Domains : Interpro (EBI)FAM213/AAED1    FAM213A   
Domain families : Pfam (Sanger)AhpC-TSA_2 (PF13911)   
Domain families : Pfam (NCBI)pfam13911   
Conserved Domain (NCBI)FAM213A
DMDM Disease mutations84293
Blocks (Seattle)FAM213A
SuperfamilyQ9BRX8
Human Protein AtlasENSG00000122378
Peptide AtlasQ9BRX8
HPRD12580
IPIIPI00296190   IPI00981307   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRX8
IntAct (EBI)Q9BRX8
FunCoupENSG00000122378
BioGRIDFAM213A
STRING (EMBL)FAM213A
ZODIACFAM213A
Ontologies - Pathways
QuickGOQ9BRX8
Ontology : AmiGOcytoplasm  mitochondrion  antioxidant activity  regulation of osteoclast differentiation  oxidation-reduction process  extracellular exosome  cellular oxidant detoxification  
Ontology : EGO-EBIcytoplasm  mitochondrion  antioxidant activity  regulation of osteoclast differentiation  oxidation-reduction process  extracellular exosome  cellular oxidant detoxification  
NDEx NetworkFAM213A
Atlas of Cancer Signalling NetworkFAM213A
Wikipedia pathwaysFAM213A
Orthology - Evolution
OrthoDB84293
GeneTree (enSembl)ENSG00000122378
Phylogenetic Trees/Animal Genes : TreeFamFAM213A
HOVERGENQ9BRX8
HOGENOMQ9BRX8
Homologs : HomoloGeneFAM213A
Homology/Alignments : Family Browser (UCSC)FAM213A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM213A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM213A
dbVarFAM213A
ClinVarFAM213A
1000_GenomesFAM213A 
Exome Variant ServerFAM213A
ExAC (Exome Aggregation Consortium)FAM213A (select the gene name)
Genetic variants : HAPMAP84293
Genomic Variants (DGV)FAM213A [DGVbeta]
DECIPHERFAM213A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM213A 
Mutations
ICGC Data PortalFAM213A 
TCGA Data PortalFAM213A 
Broad Tumor PortalFAM213A
OASIS PortalFAM213A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM213A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM213A
DgiDB (Drug Gene Interaction Database)FAM213A
DoCM (Curated mutations)FAM213A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM213A (select a term)
intoGenFAM213A
Cancer3DFAM213A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617165   
Orphanet
MedgenFAM213A
Genetic Testing Registry FAM213A
NextProtQ9BRX8 [Medical]
TSGene84293
GENETestsFAM213A
Target ValidationFAM213A
Huge Navigator FAM213A [HugePedia]
snp3D : Map Gene to Disease84293
BioCentury BCIQFAM213A
ClinGenFAM213A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84293
Chemical/Pharm GKB GenePA134969403
Clinical trialFAM213A
Miscellaneous
canSAR (ICR)FAM213A (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM213A
EVEXFAM213A
GoPubMedFAM213A
iHOPFAM213A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:07:53 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.