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FAM213B (family with sequence similarity 213, member B)

Identity

Alias_namesC1orf93
chromosome 1 open reading frame 93
family with sequence similarity 213, member B
Alias_symbol (synonym)MGC26818
Other alias
HGNC (Hugo) FAM213B
LocusID (NCBI) 127281
Atlas_Id 63137
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 2518189 and ends at 2522908 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM213B   28390
Cards
Entrez_Gene (NCBI)FAM213B  127281  family with sequence similarity 213, member B
AliasesC1orf93
GeneCards (Weizmann)FAM213B
Ensembl hg19 (Hinxton)ENSG00000157870 [Gene_View]  chr1:2518189-2522908 [Contig_View]  FAM213B [Vega]
Ensembl hg38 (Hinxton)ENSG00000157870 [Gene_View]  chr1:2518189-2522908 [Contig_View]  FAM213B [Vega]
ICGC DataPortalENSG00000157870
TCGA cBioPortalFAM213B
AceView (NCBI)FAM213B
Genatlas (Paris)FAM213B
WikiGenes127281
SOURCE (Princeton)FAM213B
Genetics Home Reference (NIH)FAM213B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM213B  -     chr1:2518189-2522908 +  1p36.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM213B  -     1p36.32   [Description]    (hg38-Dec_2013)
EnsemblFAM213B - 1p36.32 [CytoView hg19]  FAM213B - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBIFAM213B [Mapview hg19]  FAM213B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF425266 AK057027 AK075273 AK094901 AK291908
RefSeq transcript (Entrez)NM_001195736 NM_001195737 NM_001195738 NM_001195740 NM_001195741 NM_152371
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NT_187515 NW_004929288
Consensus coding sequences : CCDS (NCBI)FAM213B
Cluster EST : UnigeneHs.462033 [ NCBI ]
CGAP (NCI)Hs.462033
Alternative Splicing GalleryENSG00000157870
Gene ExpressionFAM213B [ NCBI-GEO ]   FAM213B [ EBI - ARRAY_EXPRESS ]   FAM213B [ SEEK ]   FAM213B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM213B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127281
GTEX Portal (Tissue expression)FAM213B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBF2
Splice isoforms : SwissVarQ8TBF2
Catalytic activity : Enzyme1.11.1.20 [ Enzyme-Expasy ]   1.11.1.201.11.1.20 [ IntEnz-EBI ]   1.11.1.20 [ BRENDA ]   1.11.1.20 [ KEGG ]   
PhosPhoSitePlusQ8TBF2
Domains : Interpro (EBI)Thioredoxin-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM213B
DMDM Disease mutations127281
Blocks (Seattle)FAM213B
SuperfamilyQ8TBF2
Human Protein AtlasENSG00000157870
Peptide AtlasQ8TBF2
HPRD14513
IPIIPI00910916   IPI00908363   IPI00383997   IPI00643409   IPI00976876   IPI00152199   IPI01008862   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBF2
IntAct (EBI)Q8TBF2
FunCoupENSG00000157870
BioGRIDFAM213B
STRING (EMBL)FAM213B
ZODIACFAM213B
Ontologies - Pathways
QuickGOQ8TBF2
Ontology : AmiGOprostaglandin biosynthetic process  cytoplasm  endoplasmic reticulum  cytosol  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor  arachidonic acid metabolic process  cyclooxygenase pathway  myelin sheath  small molecule metabolic process  prostaglandin-F synthase activity  oxidation-reduction process  extracellular exosome  
Ontology : EGO-EBIprostaglandin biosynthetic process  cytoplasm  endoplasmic reticulum  cytosol  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor  arachidonic acid metabolic process  cyclooxygenase pathway  myelin sheath  small molecule metabolic process  prostaglandin-F synthase activity  oxidation-reduction process  extracellular exosome  
Pathways : KEGGArachidonic acid metabolism   
NDEx NetworkFAM213B
Atlas of Cancer Signalling NetworkFAM213B
Wikipedia pathwaysFAM213B
Orthology - Evolution
OrthoDB127281
GeneTree (enSembl)ENSG00000157870
Phylogenetic Trees/Animal Genes : TreeFamFAM213B
HOVERGENQ8TBF2
HOGENOMQ8TBF2
Homologs : HomoloGeneFAM213B
Homology/Alignments : Family Browser (UCSC)FAM213B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM213B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM213B
dbVarFAM213B
ClinVarFAM213B
1000_GenomesFAM213B 
Exome Variant ServerFAM213B
ExAC (Exome Aggregation Consortium)FAM213B (select the gene name)
Genetic variants : HAPMAP127281
Genomic Variants (DGV)FAM213B [DGVbeta]
DECIPHER (Syndromes)1:2518189-2522908  ENSG00000157870
CONAN: Copy Number AnalysisFAM213B 
Mutations
ICGC Data PortalFAM213B 
TCGA Data PortalFAM213B 
Broad Tumor PortalFAM213B
OASIS PortalFAM213B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM213B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM213B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM213B
DgiDB (Drug Gene Interaction Database)FAM213B
DoCM (Curated mutations)FAM213B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM213B (select a term)
intoGenFAM213B
Cancer3DFAM213B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM213B
Genetic Testing Registry FAM213B
NextProtQ8TBF2 [Medical]
TSGene127281
GENETestsFAM213B
Huge Navigator FAM213B [HugePedia]
snp3D : Map Gene to Disease127281
BioCentury BCIQFAM213B
ClinGenFAM213B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127281
Chemical/Pharm GKB GenePA142672477
Clinical trialFAM213B
Miscellaneous
canSAR (ICR)FAM213B (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM213B
EVEXFAM213B
GoPubMedFAM213B
iHOPFAM213B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:55 CET 2017

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