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FAM214B (family with sequence similarity 214 member B)

Identity

Alias_namesKIAA1539
KIAA1539
family with sequence similarity 214, member B
Alias_symbol (synonym)FLJ11560
bA182N22.6
Other alias
HGNC (Hugo) FAM214B
LocusID (NCBI) 80256
Atlas_Id 63139
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35104121 and ends at 35111374 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM214B   25666
Cards
Entrez_Gene (NCBI)FAM214B  80256  family with sequence similarity 214 member B
AliasesKIAA1539
GeneCards (Weizmann)FAM214B
Ensembl hg19 (Hinxton)ENSG00000005238 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005238 [Gene_View]  chr9:35104121-35111374 [Contig_View]  FAM214B [Vega]
ICGC DataPortalENSG00000005238
TCGA cBioPortalFAM214B
AceView (NCBI)FAM214B
Genatlas (Paris)FAM214B
WikiGenes80256
SOURCE (Princeton)FAM214B
Genetics Home Reference (NIH)FAM214B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM214B  -     chr9:35104121-35111374 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM214B  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblFAM214B - 9p13.3 [CytoView hg19]  FAM214B - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIFAM214B [Mapview hg19]  FAM214B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040972 AK021622 AK022837 AK307682 AL583909
RefSeq transcript (Entrez)NM_001317991 NM_025182
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM214B
Cluster EST : UnigeneHs.301696 [ NCBI ]
CGAP (NCI)Hs.301696
Alternative Splicing GalleryENSG00000005238
Gene ExpressionFAM214B [ NCBI-GEO ]   FAM214B [ EBI - ARRAY_EXPRESS ]   FAM214B [ SEEK ]   FAM214B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM214B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80256
GTEX Portal (Tissue expression)FAM214B
Human Protein AtlasENSG00000005238-FAM214B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L5A3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L5A3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L5A3
Splice isoforms : SwissVarQ7L5A3
PhosPhoSitePlusQ7L5A3
Domains : Interpro (EBI)DUF4210    FAM214/SPAC3H8.04_C   
Domain families : Pfam (Sanger)Chromosome_seg (PF13889)    DUF4210 (PF13915)   
Domain families : Pfam (NCBI)pfam13889    pfam13915   
Domain families : Smart (EMBL)DUF4210 (SM01177)  
Conserved Domain (NCBI)FAM214B
DMDM Disease mutations80256
Blocks (Seattle)FAM214B
SuperfamilyQ7L5A3
Human Protein Atlas [tissue]ENSG00000005238-FAM214B [tissue]
Peptide AtlasQ7L5A3
HPRD13869
IPIIPI00000996   IPI00879411   IPI00644866   IPI00641935   
Protein Interaction databases
DIP (DOE-UCLA)Q7L5A3
IntAct (EBI)Q7L5A3
FunCoupENSG00000005238
BioGRIDFAM214B
STRING (EMBL)FAM214B
ZODIACFAM214B
Ontologies - Pathways
QuickGOQ7L5A3
Ontology : AmiGOprotein binding  nucleus  
Ontology : EGO-EBIprotein binding  nucleus  
NDEx NetworkFAM214B
Atlas of Cancer Signalling NetworkFAM214B
Wikipedia pathwaysFAM214B
Orthology - Evolution
OrthoDB80256
GeneTree (enSembl)ENSG00000005238
Phylogenetic Trees/Animal Genes : TreeFamFAM214B
HOVERGENQ7L5A3
HOGENOMQ7L5A3
Homologs : HomoloGeneFAM214B
Homology/Alignments : Family Browser (UCSC)FAM214B
Gene fusions - Rearrangements
Tumor Fusion PortalFAM214B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM214B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM214B
dbVarFAM214B
ClinVarFAM214B
1000_GenomesFAM214B 
Exome Variant ServerFAM214B
ExAC (Exome Aggregation Consortium)ENSG00000005238
GNOMAD BrowserENSG00000005238
Genetic variants : HAPMAP80256
Genomic Variants (DGV)FAM214B [DGVbeta]
DECIPHERFAM214B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM214B 
Mutations
ICGC Data PortalFAM214B 
TCGA Data PortalFAM214B 
Broad Tumor PortalFAM214B
OASIS PortalFAM214B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM214B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM214B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM214B
DgiDB (Drug Gene Interaction Database)FAM214B
DoCM (Curated mutations)FAM214B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM214B (select a term)
intoGenFAM214B
Cancer3DFAM214B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM214B
MedgenFAM214B
Genetic Testing Registry FAM214B
NextProtQ7L5A3 [Medical]
TSGene80256
GENETestsFAM214B
Target ValidationFAM214B
Huge Navigator FAM214B [HugePedia]
snp3D : Map Gene to Disease80256
BioCentury BCIQFAM214B
ClinGenFAM214B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80256
Chemical/Pharm GKB GenePA134880815
Clinical trialFAM214B
Miscellaneous
canSAR (ICR)FAM214B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM214B
EVEXFAM214B
GoPubMedFAM214B
iHOPFAM214B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:43 CET 2017

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