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FAM215A (family with sequence similarity 215 member A (non-protein coding))

Identity

Alias_namesC17orf88
chromosome 17 open reading frame 88
family with sequence similarity 215, member A (non-protein coding)
Alias_symbol (synonym)APR-2
LINC00530
Other alias
HGNC (Hugo) FAM215A
LocusID (NCBI) 23591
Atlas_Id 63140
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43917208 and ends at 43917987 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM215A   17505
Cards
Entrez_Gene (NCBI)FAM215A  23591  family with sequence similarity 215 member A (non-protein coding)
AliasesAPR-2; C17orf88; LINC00530
GeneCards (Weizmann)FAM215A
Ensembl hg19 (Hinxton)ENSG00000267496 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267496 [Gene_View]  chr17:43917208-43917987 [Contig_View]  FAM215A [Vega]
ICGC DataPortalENSG00000267496
TCGA cBioPortalFAM215A
AceView (NCBI)FAM215A
Genatlas (Paris)FAM215A
WikiGenes23591
SOURCE (Princeton)FAM215A
Genetics Home Reference (NIH)FAM215A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM215A  -     chr17:43917208-43917987 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM215A  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblFAM215A - 17q21.31 [CytoView hg19]  FAM215A - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIFAM215A [Mapview hg19]  FAM215A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF143236 BC069097 DA188505
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM215A
Cluster EST : UnigeneHs.721804 [ NCBI ]
CGAP (NCI)Hs.721804
Alternative Splicing GalleryENSG00000267496
Gene ExpressionFAM215A [ NCBI-GEO ]   FAM215A [ EBI - ARRAY_EXPRESS ]   FAM215A [ SEEK ]   FAM215A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM215A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23591
GTEX Portal (Tissue expression)FAM215A
Human Protein AtlasENSG00000267496-FAM215A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5M1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5M1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5M1
Splice isoforms : SwissVarQ9Y5M1
PhosPhoSitePlusQ9Y5M1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM215A
DMDM Disease mutations23591
Blocks (Seattle)FAM215A
SuperfamilyQ9Y5M1
Human Protein Atlas [tissue]ENSG00000267496-FAM215A [tissue]
Peptide AtlasQ9Y5M1
HPRD08497
IPIIPI00295096   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5M1
IntAct (EBI)Q9Y5M1
FunCoupENSG00000267496
BioGRIDFAM215A
STRING (EMBL)FAM215A
ZODIACFAM215A
Ontologies - Pathways
QuickGOQ9Y5M1
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkFAM215A
Atlas of Cancer Signalling NetworkFAM215A
Wikipedia pathwaysFAM215A
Orthology - Evolution
OrthoDB23591
GeneTree (enSembl)ENSG00000267496
Phylogenetic Trees/Animal Genes : TreeFamFAM215A
HOVERGENQ9Y5M1
HOGENOMQ9Y5M1
Homologs : HomoloGeneFAM215A
Homology/Alignments : Family Browser (UCSC)FAM215A
Gene fusions - Rearrangements
Fusion: Tumor Portal FAM215A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM215A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM215A
dbVarFAM215A
ClinVarFAM215A
1000_GenomesFAM215A 
Exome Variant ServerFAM215A
ExAC (Exome Aggregation Consortium)ENSG00000267496
GNOMAD BrowserENSG00000267496
Genetic variants : HAPMAP23591
Genomic Variants (DGV)FAM215A [DGVbeta]
DECIPHERFAM215A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM215A 
Mutations
ICGC Data PortalFAM215A 
TCGA Data PortalFAM215A 
Broad Tumor PortalFAM215A
OASIS PortalFAM215A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM215A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM215A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM215A
DgiDB (Drug Gene Interaction Database)FAM215A
DoCM (Curated mutations)FAM215A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM215A (select a term)
intoGenFAM215A
Cancer3DFAM215A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM215A
Genetic Testing Registry FAM215A
NextProtQ9Y5M1 [Medical]
TSGene23591
GENETestsFAM215A
Target ValidationFAM215A
Huge Navigator FAM215A [HugePedia]
snp3D : Map Gene to Disease23591
BioCentury BCIQFAM215A
ClinGenFAM215A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23591
Chemical/Pharm GKB GenePA164716952
Clinical trialFAM215A
Miscellaneous
canSAR (ICR)FAM215A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM215A
EVEXFAM215A
GoPubMedFAM215A
iHOPFAM215A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:46:54 CET 2017

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