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FAM216A (family with sequence similarity 216, member A)

Identity

Alias_namesC12orf24
chromosome 12 open reading frame 24
family with sequence similarity 216, member A
Alias_symbol (synonym)HSU79274
Other alias
HGNC (Hugo) FAM216A
LocusID (NCBI) 29902
Atlas_Id 63142
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 110906232 and ends at 110928192 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BRAP (12q24.12) / FAM216A (12q24.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM216A   30180
Cards
Entrez_Gene (NCBI)FAM216A  29902  family with sequence similarity 216, member A
AliasesC12orf24; HSU79274
GeneCards (Weizmann)FAM216A
Ensembl hg19 (Hinxton)ENSG00000204856 [Gene_View]  chr12:110906232-110928192 [Contig_View]  FAM216A [Vega]
Ensembl hg38 (Hinxton)ENSG00000204856 [Gene_View]  chr12:110906232-110928192 [Contig_View]  FAM216A [Vega]
ICGC DataPortalENSG00000204856
TCGA cBioPortalFAM216A
AceView (NCBI)FAM216A
Genatlas (Paris)FAM216A
WikiGenes29902
SOURCE (Princeton)FAM216A
Genetics Home Reference (NIH)FAM216A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM216A  -     chr12:110906232-110928192 +  12q24.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM216A  -     12q24.11   [Description]    (hg38-Dec_2013)
EnsemblFAM216A - 12q24.11 [CytoView hg19]  FAM216A - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBIFAM216A [Mapview hg19]  FAM216A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK225731 AK296280 AK297684 AK308802 AK309603
RefSeq transcript (Entrez)NM_013300
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929385
Consensus coding sequences : CCDS (NCBI)FAM216A
Cluster EST : UnigeneHs.436618 [ NCBI ]
CGAP (NCI)Hs.436618
Alternative Splicing GalleryENSG00000204856
Gene ExpressionFAM216A [ NCBI-GEO ]   FAM216A [ EBI - ARRAY_EXPRESS ]   FAM216A [ SEEK ]   FAM216A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM216A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29902
GTEX Portal (Tissue expression)FAM216A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUB2
Splice isoforms : SwissVarQ8WUB2
PhosPhoSitePlusQ8WUB2
Domains : Interpro (EBI)FAM216   
Domain families : Pfam (Sanger)FAM216B (PF15107)   
Domain families : Pfam (NCBI)pfam15107   
Conserved Domain (NCBI)FAM216A
DMDM Disease mutations29902
Blocks (Seattle)FAM216A
SuperfamilyQ8WUB2
Human Protein AtlasENSG00000204856
Peptide AtlasQ8WUB2
HPRD17119
IPIIPI00291108   IPI01010944   IPI01022993   IPI01022833   IPI01020812   IPI01020670   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUB2
IntAct (EBI)Q8WUB2
FunCoupENSG00000204856
BioGRIDFAM216A
STRING (EMBL)FAM216A
ZODIACFAM216A
Ontologies - Pathways
QuickGOQ8WUB2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM216A
Atlas of Cancer Signalling NetworkFAM216A
Wikipedia pathwaysFAM216A
Orthology - Evolution
OrthoDB29902
GeneTree (enSembl)ENSG00000204856
Phylogenetic Trees/Animal Genes : TreeFamFAM216A
HOVERGENQ8WUB2
HOGENOMQ8WUB2
Homologs : HomoloGeneFAM216A
Homology/Alignments : Family Browser (UCSC)FAM216A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM216A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM216A
dbVarFAM216A
ClinVarFAM216A
1000_GenomesFAM216A 
Exome Variant ServerFAM216A
ExAC (Exome Aggregation Consortium)FAM216A (select the gene name)
Genetic variants : HAPMAP29902
Genomic Variants (DGV)FAM216A [DGVbeta]
DECIPHER (Syndromes)12:110906232-110928192  ENSG00000204856
CONAN: Copy Number AnalysisFAM216A 
Mutations
ICGC Data PortalFAM216A 
TCGA Data PortalFAM216A 
Broad Tumor PortalFAM216A
OASIS PortalFAM216A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM216A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM216A
DgiDB (Drug Gene Interaction Database)FAM216A
DoCM (Curated mutations)FAM216A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM216A (select a term)
intoGenFAM216A
Cancer3DFAM216A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM216A
Genetic Testing Registry FAM216A
NextProtQ8WUB2 [Medical]
TSGene29902
GENETestsFAM216A
Huge Navigator FAM216A [HugePedia]
snp3D : Map Gene to Disease29902
BioCentury BCIQFAM216A
ClinGenFAM216A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29902
Chemical/Pharm GKB GenePA128395781
Clinical trialFAM216A
Miscellaneous
canSAR (ICR)FAM216A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM216A
EVEXFAM216A
GoPubMedFAM216A
iHOPFAM216A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:56 CET 2017

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