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FAM216B (family with sequence similarity 216 member B)

Identity

Alias (NCBI)C13orf30
HGNC (Hugo) FAM216B
HGNC Alias symbFLJ40919
HGNC Previous nameC13orf30
HGNC Previous namechromosome 13 open reading frame 30
 family with sequence similarity 216, member B
LocusID (NCBI) 144809
Atlas_Id 63143
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 42781550 and ends at 42791549 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
UBE2K (4p14) / FAM216B (13q14.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)FAM216B   26883
Cards
Entrez_Gene (NCBI)FAM216B    family with sequence similarity 216 member B
AliasesC13orf30
GeneCards (Weizmann)FAM216B
Ensembl hg19 (Hinxton)ENSG00000179813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179813 [Gene_View]  ENSG00000179813 [Sequence]  chr13:42781550-42791549 [Contig_View]  FAM216B [Vega]
ICGC DataPortalENSG00000179813
TCGA cBioPortalFAM216B
AceView (NCBI)FAM216B
Genatlas (Paris)FAM216B
SOURCE (Princeton)FAM216B
Genetics Home Reference (NIH)FAM216B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM216B  -     chr13:42781550-42791549 +  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM216B  -     13q14.11   [Description]    (hg19-Feb_2009)
GoldenPathFAM216B - 13q14.11 [CytoView hg19]  FAM216B - 13q14.11 [CytoView hg38]
ImmunoBaseENSG00000179813
genome Data Viewer NCBIFAM216B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK098238 AK310859 BC093659 BC112237 CB240730
RefSeq transcript (Entrez)NM_001318932 NM_182508
Consensus coding sequences : CCDS (NCBI)FAM216B
Alternative Splicing GalleryENSG00000179813
Gene ExpressionFAM216B [ NCBI-GEO ]   FAM216B [ EBI - ARRAY_EXPRESS ]   FAM216B [ SEEK ]   FAM216B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM216B [ Firebrowse - Broad ]
GenevisibleExpression of FAM216B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144809
GTEX Portal (Tissue expression)FAM216B
Human Protein AtlasENSG00000179813-FAM216B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7L0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7L0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7L0
PhosPhoSitePlusQ8N7L0
Domains : Interpro (EBI)FAM216   
Domain families : Pfam (Sanger)FAM216B (PF15107)   
Domain families : Pfam (NCBI)pfam15107   
Conserved Domain (NCBI)FAM216B
SuperfamilyQ8N7L0
AlphaFold pdb e-kbQ8N7L0   
Human Protein Atlas [tissue]ENSG00000179813-FAM216B [tissue]
HPRD08289
Protein Interaction databases
DIP (DOE-UCLA)Q8N7L0
IntAct (EBI)Q8N7L0
BioGRIDFAM216B
STRING (EMBL)FAM216B
ZODIACFAM216B
Ontologies - Pathways
QuickGOQ8N7L0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM216B
Atlas of Cancer Signalling NetworkFAM216B
Wikipedia pathwaysFAM216B
Orthology - Evolution
OrthoDB144809
GeneTree (enSembl)ENSG00000179813
Phylogenetic Trees/Animal Genes : TreeFamFAM216B
Homologs : HomoloGeneFAM216B
Homology/Alignments : Family Browser (UCSC)FAM216B
Gene fusions - Rearrangements
Fusion : QuiverFAM216B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM216B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM216B
dbVarFAM216B
ClinVarFAM216B
MonarchFAM216B
1000_GenomesFAM216B 
Exome Variant ServerFAM216B
GNOMAD BrowserENSG00000179813
Varsome BrowserFAM216B
Genomic Variants (DGV)FAM216B [DGVbeta]
DECIPHERFAM216B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM216B 
Mutations
ICGC Data PortalFAM216B 
TCGA Data PortalFAM216B 
Broad Tumor PortalFAM216B
OASIS PortalFAM216B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM216B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM216B
Mutations and Diseases : HGMDFAM216B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutasearch FAM216B
DgiDB (Drug Gene Interaction Database)FAM216B
DoCM (Curated mutations)FAM216B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM216B (select a term)
Cancer3DFAM216B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM216B
MedgenFAM216B
Genetic Testing Registry FAM216B
NextProtQ8N7L0 [Medical]
GENETestsFAM216B
Target ValidationFAM216B
Huge Navigator FAM216B [HugePedia]
ClinGenFAM216B
Clinical trials, drugs, therapy
MyCancerGenomeFAM216B
Protein Interactions : CTDFAM216B
Pharm GKB GenePA147358510
PharosQ8N7L0
Clinical trialFAM216B
Miscellaneous
canSAR (ICR)FAM216B
HarmonizomeFAM216B
DataMed IndexFAM216B
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM216B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Sep 15 22:56:08 CEST 2021

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