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FAM216B (family with sequence similarity 216 member B)

Identity

Alias_namesC13orf30
chromosome 13 open reading frame 30
family with sequence similarity 216, member B
Alias_symbol (synonym)FLJ40919
Other alias
HGNC (Hugo) FAM216B
LocusID (NCBI) 144809
Atlas_Id 63143
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 42781550 and ends at 42791549 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
UBE2K (4p14) / FAM216B (13q14.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM216B   26883
Cards
Entrez_Gene (NCBI)FAM216B  144809  family with sequence similarity 216 member B
AliasesC13orf30
GeneCards (Weizmann)FAM216B
Ensembl hg19 (Hinxton)ENSG00000179813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179813 [Gene_View]  chr13:42781550-42791549 [Contig_View]  FAM216B [Vega]
ICGC DataPortalENSG00000179813
TCGA cBioPortalFAM216B
AceView (NCBI)FAM216B
Genatlas (Paris)FAM216B
WikiGenes144809
SOURCE (Princeton)FAM216B
Genetics Home Reference (NIH)FAM216B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM216B  -     chr13:42781550-42791549 +  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM216B  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblFAM216B - 13q14.11 [CytoView hg19]  FAM216B - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBIFAM216B [Mapview hg19]  FAM216B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098238 AK310859 BC093659 BC112237 CB240730
RefSeq transcript (Entrez)NM_001318932 NM_182508
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM216B
Cluster EST : UnigeneHs.16970 [ NCBI ]
CGAP (NCI)Hs.16970
Alternative Splicing GalleryENSG00000179813
Gene ExpressionFAM216B [ NCBI-GEO ]   FAM216B [ EBI - ARRAY_EXPRESS ]   FAM216B [ SEEK ]   FAM216B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM216B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144809
GTEX Portal (Tissue expression)FAM216B
Human Protein AtlasENSG00000179813-FAM216B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7L0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7L0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7L0
Splice isoforms : SwissVarQ8N7L0
PhosPhoSitePlusQ8N7L0
Domains : Interpro (EBI)FAM216   
Domain families : Pfam (Sanger)FAM216B (PF15107)   
Domain families : Pfam (NCBI)pfam15107   
Conserved Domain (NCBI)FAM216B
DMDM Disease mutations144809
Blocks (Seattle)FAM216B
SuperfamilyQ8N7L0
Human Protein Atlas [tissue]ENSG00000179813-FAM216B [tissue]
Peptide AtlasQ8N7L0
HPRD08289
IPIIPI00167236   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7L0
IntAct (EBI)Q8N7L0
FunCoupENSG00000179813
BioGRIDFAM216B
STRING (EMBL)FAM216B
ZODIACFAM216B
Ontologies - Pathways
QuickGOQ8N7L0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM216B
Atlas of Cancer Signalling NetworkFAM216B
Wikipedia pathwaysFAM216B
Orthology - Evolution
OrthoDB144809
GeneTree (enSembl)ENSG00000179813
Phylogenetic Trees/Animal Genes : TreeFamFAM216B
HOVERGENQ8N7L0
HOGENOMQ8N7L0
Homologs : HomoloGeneFAM216B
Homology/Alignments : Family Browser (UCSC)FAM216B
Gene fusions - Rearrangements
Tumor Fusion PortalFAM216B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM216B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM216B
dbVarFAM216B
ClinVarFAM216B
1000_GenomesFAM216B 
Exome Variant ServerFAM216B
ExAC (Exome Aggregation Consortium)ENSG00000179813
GNOMAD BrowserENSG00000179813
Genetic variants : HAPMAP144809
Genomic Variants (DGV)FAM216B [DGVbeta]
DECIPHERFAM216B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM216B 
Mutations
ICGC Data PortalFAM216B 
TCGA Data PortalFAM216B 
Broad Tumor PortalFAM216B
OASIS PortalFAM216B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM216B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM216B
DgiDB (Drug Gene Interaction Database)FAM216B
DoCM (Curated mutations)FAM216B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM216B (select a term)
intoGenFAM216B
Cancer3DFAM216B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM216B
MedgenFAM216B
Genetic Testing Registry FAM216B
NextProtQ8N7L0 [Medical]
TSGene144809
GENETestsFAM216B
Target ValidationFAM216B
Huge Navigator FAM216B [HugePedia]
snp3D : Map Gene to Disease144809
BioCentury BCIQFAM216B
ClinGenFAM216B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144809
Chemical/Pharm GKB GenePA147358510
Clinical trialFAM216B
Miscellaneous
canSAR (ICR)FAM216B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM216B
EVEXFAM216B
GoPubMedFAM216B
iHOPFAM216B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:59 CET 2017

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