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FAM217A (family with sequence similarity 217 member A)

Identity

Alias_namesC6orf146
chromosome 6 open reading frame 146
family with sequence similarity 217, member A
Alias_symbol (synonym)MGC43581
Other alias
HGNC (Hugo) FAM217A
LocusID (NCBI) 222826
Atlas_Id 63144
Location 6p25.2  [Link to chromosome band 6p25]
Location_base_pair Starts at 4068359 and ends at 4079223 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM217A   21362
Cards
Entrez_Gene (NCBI)FAM217A  222826  family with sequence similarity 217 member A
AliasesC6orf146
GeneCards (Weizmann)FAM217A
Ensembl hg19 (Hinxton)ENSG00000145975 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145975 [Gene_View]  ENSG00000145975 [Sequence]  chr6:4068359-4079223 [Contig_View]  FAM217A [Vega]
ICGC DataPortalENSG00000145975
TCGA cBioPortalFAM217A
AceView (NCBI)FAM217A
Genatlas (Paris)FAM217A
WikiGenes222826
SOURCE (Princeton)FAM217A
Genetics Home Reference (NIH)FAM217A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM217A  -     chr6:4068359-4079223 -  6p25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM217A  -     6p25.2   [Description]    (hg19-Feb_2009)
EnsemblFAM217A - 6p25.2 [CytoView hg19]  FAM217A - 6p25.2 [CytoView hg38]
Mapping of homologs : NCBIFAM217A [Mapview hg19]  FAM217A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097426 BC039349 HQ448497
RefSeq transcript (Entrez)NM_173563
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM217A
Cluster EST : UnigeneHs.657342 [ NCBI ]
CGAP (NCI)Hs.657342
Alternative Splicing GalleryENSG00000145975
Gene ExpressionFAM217A [ NCBI-GEO ]   FAM217A [ EBI - ARRAY_EXPRESS ]   FAM217A [ SEEK ]   FAM217A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM217A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222826
GTEX Portal (Tissue expression)FAM217A
Human Protein AtlasENSG00000145975-FAM217A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXS0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXS0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXS0
Splice isoforms : SwissVarQ8IXS0
PhosPhoSitePlusQ8IXS0
Domains : Interpro (EBI)FAM217   
Domain families : Pfam (Sanger)FAM217 (PF15344)   
Domain families : Pfam (NCBI)pfam15344   
Conserved Domain (NCBI)FAM217A
DMDM Disease mutations222826
Blocks (Seattle)FAM217A
SuperfamilyQ8IXS0
Human Protein Atlas [tissue]ENSG00000145975-FAM217A [tissue]
Peptide AtlasQ8IXS0
HPRD10789
IPIIPI00217605   IPI01012389   IPI00946462   IPI00947473   IPI00946820   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXS0
IntAct (EBI)Q8IXS0
FunCoupENSG00000145975
BioGRIDFAM217A
STRING (EMBL)FAM217A
ZODIACFAM217A
Ontologies - Pathways
QuickGOQ8IXS0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM217A
Atlas of Cancer Signalling NetworkFAM217A
Wikipedia pathwaysFAM217A
Orthology - Evolution
OrthoDB222826
GeneTree (enSembl)ENSG00000145975
Phylogenetic Trees/Animal Genes : TreeFamFAM217A
HOVERGENQ8IXS0
HOGENOMQ8IXS0
Homologs : HomoloGeneFAM217A
Homology/Alignments : Family Browser (UCSC)FAM217A
Gene fusions - Rearrangements
Fusion : QuiverFAM217A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM217A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM217A
dbVarFAM217A
ClinVarFAM217A
1000_GenomesFAM217A 
Exome Variant ServerFAM217A
ExAC (Exome Aggregation Consortium)ENSG00000145975
GNOMAD BrowserENSG00000145975
Varsome BrowserFAM217A
Genetic variants : HAPMAP222826
Genomic Variants (DGV)FAM217A [DGVbeta]
DECIPHERFAM217A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM217A 
Mutations
ICGC Data PortalFAM217A 
TCGA Data PortalFAM217A 
Broad Tumor PortalFAM217A
OASIS PortalFAM217A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM217A
BioMutasearch FAM217A
DgiDB (Drug Gene Interaction Database)FAM217A
DoCM (Curated mutations)FAM217A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM217A (select a term)
intoGenFAM217A
Cancer3DFAM217A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM217A
MedgenFAM217A
Genetic Testing Registry FAM217A
NextProtQ8IXS0 [Medical]
TSGene222826
GENETestsFAM217A
Target ValidationFAM217A
Huge Navigator FAM217A [HugePedia]
snp3D : Map Gene to Disease222826
BioCentury BCIQFAM217A
ClinGenFAM217A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222826
Chemical/Pharm GKB GenePA134935759
Clinical trialFAM217A
Miscellaneous
canSAR (ICR)FAM217A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM217A
EVEXFAM217A
GoPubMedFAM217A
iHOPFAM217A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:45:06 CEST 2018

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