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FAM217B (family with sequence similarity 217 member B)

Identity

Alias_namesC20orf177
chromosome 20 open reading frame 177
family with sequence similarity 217, member B
Alias_symbol (synonym)dJ551D2.5
Other alias
HGNC (Hugo) FAM217B
LocusID (NCBI) 63939
Atlas_Id 63145
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 59933764 and ends at 59948647 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM217B (20q13.33) / PRPF6 (20q13.33)FAM217B (20q13.33) / SLC13A2 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM217B   16170
Cards
Entrez_Gene (NCBI)FAM217B  63939  family with sequence similarity 217 member B
AliasesC20orf177; dJ551D2.5
GeneCards (Weizmann)FAM217B
Ensembl hg19 (Hinxton)ENSG00000196227 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196227 [Gene_View]  chr20:59933764-59948647 [Contig_View]  FAM217B [Vega]
ICGC DataPortalENSG00000196227
TCGA cBioPortalFAM217B
AceView (NCBI)FAM217B
Genatlas (Paris)FAM217B
WikiGenes63939
SOURCE (Princeton)FAM217B
Genetics Home Reference (NIH)FAM217B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM217B  -     chr20:59933764-59948647 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM217B  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblFAM217B - 20q13.33 [CytoView hg19]  FAM217B - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIFAM217B [Mapview hg19]  FAM217B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074295 AK125073 AK304220 AL137442 BC020771
RefSeq transcript (Entrez)NM_001190826 NM_001190827 NM_022106
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM217B
Cluster EST : UnigeneHs.596058 [ NCBI ]
CGAP (NCI)Hs.596058
Alternative Splicing GalleryENSG00000196227
Gene ExpressionFAM217B [ NCBI-GEO ]   FAM217B [ EBI - ARRAY_EXPRESS ]   FAM217B [ SEEK ]   FAM217B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM217B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63939
GTEX Portal (Tissue expression)FAM217B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTX9
Splice isoforms : SwissVarQ9NTX9
PhosPhoSitePlusQ9NTX9
Domains : Interpro (EBI)FAM217   
Domain families : Pfam (Sanger)FAM217 (PF15344)   
Domain families : Pfam (NCBI)pfam15344   
Conserved Domain (NCBI)FAM217B
DMDM Disease mutations63939
Blocks (Seattle)FAM217B
SuperfamilyQ9NTX9
Human Protein AtlasENSG00000196227
Peptide AtlasQ9NTX9
HPRD12758
IPIIPI00011773   IPI00981433   IPI00794892   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTX9
IntAct (EBI)Q9NTX9
FunCoupENSG00000196227
BioGRIDFAM217B
STRING (EMBL)FAM217B
ZODIACFAM217B
Ontologies - Pathways
QuickGOQ9NTX9
Ontology : AmiGOnucleoplasm  cytosol  
Ontology : EGO-EBInucleoplasm  cytosol  
NDEx NetworkFAM217B
Atlas of Cancer Signalling NetworkFAM217B
Wikipedia pathwaysFAM217B
Orthology - Evolution
OrthoDB63939
GeneTree (enSembl)ENSG00000196227
Phylogenetic Trees/Animal Genes : TreeFamFAM217B
HOVERGENQ9NTX9
HOGENOMQ9NTX9
Homologs : HomoloGeneFAM217B
Homology/Alignments : Family Browser (UCSC)FAM217B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM217B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM217B
dbVarFAM217B
ClinVarFAM217B
1000_GenomesFAM217B 
Exome Variant ServerFAM217B
ExAC (Exome Aggregation Consortium)FAM217B (select the gene name)
Genetic variants : HAPMAP63939
Genomic Variants (DGV)FAM217B [DGVbeta]
DECIPHERFAM217B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM217B 
Mutations
ICGC Data PortalFAM217B 
TCGA Data PortalFAM217B 
Broad Tumor PortalFAM217B
OASIS PortalFAM217B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM217B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM217B
DgiDB (Drug Gene Interaction Database)FAM217B
DoCM (Curated mutations)FAM217B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM217B (select a term)
intoGenFAM217B
Cancer3DFAM217B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM217B
Genetic Testing Registry FAM217B
NextProtQ9NTX9 [Medical]
TSGene63939
GENETestsFAM217B
Target ValidationFAM217B
Huge Navigator FAM217B [HugePedia]
snp3D : Map Gene to Disease63939
BioCentury BCIQFAM217B
ClinGenFAM217B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63939
Chemical/Pharm GKB GenePA25720
Clinical trialFAM217B
Miscellaneous
canSAR (ICR)FAM217B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM217B
EVEXFAM217B
GoPubMedFAM217B
iHOPFAM217B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:54 CEST 2017

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