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FAM217B (family with sequence similarity 217 member B)

Identity

Alias (NCBI)C20orf177
dJ551D2.5
HGNC (Hugo) FAM217B
HGNC Alias symbdJ551D2.5
HGNC Previous nameC20orf177
HGNC Previous namechromosome 20 open reading frame 177
 family with sequence similarity 217, member B
LocusID (NCBI) 63939
Atlas_Id 63145
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 59940389 and ends at 59948680 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM217B (20q13.33) / PRPF6 (20q13.33)FAM217B (20q13.33) / SLC13A2 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FAM217B   16170
Cards
Entrez_Gene (NCBI)FAM217B    family with sequence similarity 217 member B
AliasesC20orf177; dJ551D2.5
GeneCards (Weizmann)FAM217B
Ensembl hg19 (Hinxton)ENSG00000196227 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196227 [Gene_View]  ENSG00000196227 [Sequence]  chr20:59940389-59948680 [Contig_View]  FAM217B [Vega]
ICGC DataPortalENSG00000196227
TCGA cBioPortalFAM217B
AceView (NCBI)FAM217B
Genatlas (Paris)FAM217B
SOURCE (Princeton)FAM217B
Genetics Home Reference (NIH)FAM217B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM217B  -     chr20:59940389-59948680 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM217B  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathFAM217B - 20q13.33 [CytoView hg19]  FAM217B - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000196227
Genome Data Viewer NCBIFAM217B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK074295 AK125073 AK304220 AL137442 BC020771
RefSeq transcript (Entrez)NM_001190826 NM_001190827 NM_022106
Consensus coding sequences : CCDS (NCBI)FAM217B
Gene ExpressionFAM217B [ NCBI-GEO ]   FAM217B [ EBI - ARRAY_EXPRESS ]   FAM217B [ SEEK ]   FAM217B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM217B [ Firebrowse - Broad ]
GenevisibleExpression of FAM217B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63939
GTEX Portal (Tissue expression)FAM217B
Human Protein AtlasENSG00000196227-FAM217B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTX9
PhosPhoSitePlusQ9NTX9
Domains : Interpro (EBI)FAM217   
Domain families : Pfam (Sanger)FAM217 (PF15344)   
Domain families : Pfam (NCBI)pfam15344   
Conserved Domain (NCBI)FAM217B
SuperfamilyQ9NTX9
AlphaFold pdb e-kbQ9NTX9   
Human Protein Atlas [tissue]ENSG00000196227-FAM217B [tissue]
HPRD12758
Protein Interaction databases
DIP (DOE-UCLA)Q9NTX9
IntAct (EBI)Q9NTX9
BioGRIDFAM217B
STRING (EMBL)FAM217B
ZODIACFAM217B
Ontologies - Pathways
QuickGOQ9NTX9
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  
NDEx NetworkFAM217B
Atlas of Cancer Signalling NetworkFAM217B
Wikipedia pathwaysFAM217B
Orthology - Evolution
OrthoDB63939
GeneTree (enSembl)ENSG00000196227
Phylogenetic Trees/Animal Genes : TreeFamFAM217B
Homologs : HomoloGeneFAM217B
Homology/Alignments : Family Browser (UCSC)FAM217B
Gene fusions - Rearrangements
Fusion : QuiverFAM217B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM217B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM217B
dbVarFAM217B
ClinVarFAM217B
MonarchFAM217B
1000_GenomesFAM217B 
Exome Variant ServerFAM217B
GNOMAD BrowserENSG00000196227
Varsome BrowserFAM217B
ACMGFAM217B variants
VarityQ9NTX9
Genomic Variants (DGV)FAM217B [DGVbeta]
DECIPHERFAM217B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM217B 
Mutations
ICGC Data PortalFAM217B 
TCGA Data PortalFAM217B 
Broad Tumor PortalFAM217B
OASIS PortalFAM217B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM217B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM217B
Mutations and Diseases : HGMDFAM217B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFAM217B
DgiDB (Drug Gene Interaction Database)FAM217B
DoCM (Curated mutations)FAM217B
CIViC (Clinical Interpretations of Variants in Cancer)FAM217B
Cancer3DFAM217B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM217B
MedgenFAM217B
Genetic Testing Registry FAM217B
NextProtQ9NTX9 [Medical]
GENETestsFAM217B
Target ValidationFAM217B
Huge Navigator FAM217B [HugePedia]
ClinGenFAM217B
Clinical trials, drugs, therapy
MyCancerGenomeFAM217B
Protein Interactions : CTDFAM217B
Pharm GKB GenePA25720
PharosQ9NTX9
Clinical trialFAM217B
Miscellaneous
canSAR (ICR)FAM217B
HarmonizomeFAM217B
DataMed IndexFAM217B
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM217B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:49:49 CEST 2021

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