Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM218A (family with sequence similarity 218 member A)

Identity

Alias_namesC4orf39
chromosome 4 open reading frame 39
family with sequence similarity 218, member A
Alias_symbol (synonym)FLJ31659
Other alias
HGNC (Hugo) FAM218A
LocusID (NCBI) 152756
Atlas_Id 63146
Location 4q32.3  [Link to chromosome band 4q32]
Location_base_pair Starts at 164956948 and ends at 164959121 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM218A   26466
Cards
Entrez_Gene (NCBI)FAM218A  152756  family with sequence similarity 218 member A
AliasesC4orf39
GeneCards (Weizmann)FAM218A
Ensembl hg19 (Hinxton)ENSG00000250486 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250486 [Gene_View]  chr4:164956948-164959121 [Contig_View]  FAM218A [Vega]
ICGC DataPortalENSG00000250486
TCGA cBioPortalFAM218A
AceView (NCBI)FAM218A
Genatlas (Paris)FAM218A
WikiGenes152756
SOURCE (Princeton)FAM218A
Genetics Home Reference (NIH)FAM218A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM218A  -     chr4:164956948-164959121 +  4q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM218A  -     4q32.3   [Description]    (hg19-Feb_2009)
EnsemblFAM218A - 4q32.3 [CytoView hg19]  FAM218A - 4q32.3 [CytoView hg38]
Mapping of homologs : NCBIFAM218A [Mapview hg19]  FAM218A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056221 BC022381 HQ447758
RefSeq transcript (Entrez)NM_153027
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM218A
Cluster EST : UnigeneHs.178648 [ NCBI ]
CGAP (NCI)Hs.178648
Alternative Splicing GalleryENSG00000250486
Gene ExpressionFAM218A [ NCBI-GEO ]   FAM218A [ EBI - ARRAY_EXPRESS ]   FAM218A [ SEEK ]   FAM218A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM218A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152756
GTEX Portal (Tissue expression)FAM218A
Human Protein AtlasENSG00000250486-FAM218A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MZ4
Splice isoforms : SwissVarQ96MZ4
PhosPhoSitePlusQ96MZ4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM218A
DMDM Disease mutations152756
Blocks (Seattle)FAM218A
SuperfamilyQ96MZ4
Human Protein Atlas [tissue]ENSG00000250486-FAM218A [tissue]
Peptide AtlasQ96MZ4
HPRD08714
IPIIPI00043543   
Protein Interaction databases
DIP (DOE-UCLA)Q96MZ4
IntAct (EBI)Q96MZ4
FunCoupENSG00000250486
BioGRIDFAM218A
STRING (EMBL)FAM218A
ZODIACFAM218A
Ontologies - Pathways
QuickGOQ96MZ4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM218A
Atlas of Cancer Signalling NetworkFAM218A
Wikipedia pathwaysFAM218A
Orthology - Evolution
OrthoDB152756
GeneTree (enSembl)ENSG00000250486
Phylogenetic Trees/Animal Genes : TreeFamFAM218A
HOVERGENQ96MZ4
HOGENOMQ96MZ4
Homologs : HomoloGeneFAM218A
Homology/Alignments : Family Browser (UCSC)FAM218A
Gene fusions - Rearrangements
Tumor Fusion PortalFAM218A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM218A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM218A
dbVarFAM218A
ClinVarFAM218A
1000_GenomesFAM218A 
Exome Variant ServerFAM218A
ExAC (Exome Aggregation Consortium)ENSG00000250486
GNOMAD BrowserENSG00000250486
Genetic variants : HAPMAP152756
Genomic Variants (DGV)FAM218A [DGVbeta]
DECIPHERFAM218A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM218A 
Mutations
ICGC Data PortalFAM218A 
TCGA Data PortalFAM218A 
Broad Tumor PortalFAM218A
OASIS PortalFAM218A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM218A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM218A
DgiDB (Drug Gene Interaction Database)FAM218A
DoCM (Curated mutations)FAM218A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM218A (select a term)
intoGenFAM218A
Cancer3DFAM218A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM218A
MedgenFAM218A
Genetic Testing Registry FAM218A
NextProtQ96MZ4 [Medical]
TSGene152756
GENETestsFAM218A
Target ValidationFAM218A
Huge Navigator FAM218A [HugePedia]
snp3D : Map Gene to Disease152756
BioCentury BCIQFAM218A
ClinGenFAM218A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152756
Chemical/Pharm GKB GenePA162379827
Clinical trialFAM218A
Miscellaneous
canSAR (ICR)FAM218A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM218A
EVEXFAM218A
GoPubMedFAM218A
iHOPFAM218A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:09:52 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.