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FAM218A (family with sequence similarity 218 member A)

Identity

Alias (NCBI)C4orf39
TRIM61-AS1
HGNC (Hugo) FAM218A
HGNC Alias symbFLJ31659
HGNC Previous nameC4orf39
HGNC Previous namechromosome 4 open reading frame 39
 family with sequence similarity 218, member A
LocusID (NCBI) 152756
Atlas_Id 63146
Location 4q32.3  [Link to chromosome band 4q32]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FAM218A   26466
Cards
Entrez_Gene (NCBI)FAM218A    family with sequence similarity 218 member A
AliasesC4orf39; TRIM61-AS1
GeneCards (Weizmann)FAM218A
Ensembl hg19 (Hinxton)ENSG00000250486 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250486 [Gene_View]  ENSG00000250486 [Sequence]  - [Contig_View]  FAM218A [Vega]
ICGC DataPortalENSG00000250486
TCGA cBioPortalFAM218A
AceView (NCBI)FAM218A
Genatlas (Paris)FAM218A
SOURCE (Princeton)FAM218A
Genetics Home Reference (NIH)FAM218A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM218A  -  
GoldenPath hg19 (UCSC)FAM218A  -  
GoldenPathFAM218A - [CytoView hg19]  FAM218A - [CytoView hg38]
ImmunoBaseENSG00000250486
Genome Data Viewer NCBIFAM218A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI972368 AK056221 BC022381
RefSeq transcript (Entrez)NM_153027
Consensus coding sequences : CCDS (NCBI)FAM218A
Gene ExpressionFAM218A [ NCBI-GEO ]   FAM218A [ EBI - ARRAY_EXPRESS ]   FAM218A [ SEEK ]   FAM218A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM218A [ Firebrowse - Broad ]
GenevisibleExpression of FAM218A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152756
GTEX Portal (Tissue expression)FAM218A
Human Protein AtlasENSG00000250486-FAM218A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MZ4
PhosPhoSitePlusQ96MZ4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM218A
SuperfamilyQ96MZ4
AlphaFold pdb e-kbQ96MZ4   
Human Protein Atlas [tissue]ENSG00000250486-FAM218A [tissue]
HPRD08714
Protein Interaction databases
DIP (DOE-UCLA)Q96MZ4
IntAct (EBI)Q96MZ4
BioGRIDFAM218A
STRING (EMBL)FAM218A
ZODIACFAM218A
Ontologies - Pathways
QuickGOQ96MZ4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM218A
Atlas of Cancer Signalling NetworkFAM218A
Wikipedia pathwaysFAM218A
Orthology - Evolution
OrthoDB152756
GeneTree (enSembl)ENSG00000250486
Phylogenetic Trees/Animal Genes : TreeFamFAM218A
Homologs : HomoloGeneFAM218A
Homology/Alignments : Family Browser (UCSC)FAM218A
Gene fusions - Rearrangements
Fusion : QuiverFAM218A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM218A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM218A
dbVarFAM218A
ClinVarFAM218A
MonarchFAM218A
1000_GenomesFAM218A 
Exome Variant ServerFAM218A
GNOMAD BrowserENSG00000250486
Varsome BrowserFAM218A
ACMGFAM218A variants
VarityQ96MZ4
Genomic Variants (DGV)FAM218A [DGVbeta]
DECIPHERFAM218A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM218A 
Mutations
ICGC Data PortalFAM218A 
TCGA Data PortalFAM218A 
Broad Tumor PortalFAM218A
OASIS PortalFAM218A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM218A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM218A
Mutations and Diseases : HGMDFAM218A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFAM218A
DgiDB (Drug Gene Interaction Database)FAM218A
DoCM (Curated mutations)FAM218A
CIViC (Clinical Interpretations of Variants in Cancer)FAM218A
Cancer3DFAM218A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM218A
MedgenFAM218A
Genetic Testing Registry FAM218A
NextProtQ96MZ4 [Medical]
GENETestsFAM218A
Target ValidationFAM218A
Huge Navigator FAM218A [HugePedia]
ClinGenFAM218A
Clinical trials, drugs, therapy
MyCancerGenomeFAM218A
Protein Interactions : CTDFAM218A
Pharm GKB GenePA162379827
PharosQ96MZ4
Clinical trialFAM218A
Miscellaneous
canSAR (ICR)FAM218A
HarmonizomeFAM218A
DataMed IndexFAM218A
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM218A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:49:49 CEST 2021

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