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FAM219A (family with sequence similarity 219 member A)

Identity

Alias_namesC9orf25
chromosome 9 open reading frame 25
family with sequence similarity 219, member A
Alias_symbol (synonym)bA573M23.5
FLJ39031
Other alias
HGNC (Hugo) FAM219A
LocusID (NCBI) 203259
Atlas_Id 54307
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34398182 and ends at 34458568 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DHX57 (2p22.1) / FAM219A (9p13.3)FAM219A (9p13.3) / FAM219A (9p13.3)FAM219A (9p13.3) / ISLR (15q24.1)
FAM219A (9p13.3) / PPP4R1L (20q13.32)FAM219A (9p13.3) / RNGTT (6q15)FAM219A (9p13.3) / S1PR5 (19p13.2)
ISLR (15q24.1) / FAM219A (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)FAM219A   19920
Cards
Entrez_Gene (NCBI)FAM219A  203259  family with sequence similarity 219 member A
AliasesC9orf25
GeneCards (Weizmann)FAM219A
Ensembl hg19 (Hinxton)ENSG00000164970 [Gene_View]  chr9:34398182-34458568 [Contig_View]  FAM219A [Vega]
Ensembl hg38 (Hinxton)ENSG00000164970 [Gene_View]  chr9:34398182-34458568 [Contig_View]  FAM219A [Vega]
ICGC DataPortalENSG00000164970
TCGA cBioPortalFAM219A
AceView (NCBI)FAM219A
Genatlas (Paris)FAM219A
WikiGenes203259
SOURCE (Princeton)FAM219A
Genetics Home Reference (NIH)FAM219A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM219A  -     chr9:34398182-34458568 -  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM219A  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblFAM219A - 9p13.3 [CytoView hg19]  FAM219A - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIFAM219A [Mapview hg19]  FAM219A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131828 AK022819 AK026087 AK091262 AK096350
RefSeq transcript (Entrez)NM_001184940 NM_001184941 NM_001184942 NM_001184943 NM_001184944 NM_001184945 NM_147202
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_027971 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)FAM219A
Cluster EST : UnigeneHs.493771 [ NCBI ]
CGAP (NCI)Hs.493771
Alternative Splicing GalleryENSG00000164970
Gene ExpressionFAM219A [ NCBI-GEO ]   FAM219A [ EBI - ARRAY_EXPRESS ]   FAM219A [ SEEK ]   FAM219A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM219A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203259
GTEX Portal (Tissue expression)FAM219A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IW50   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IW50  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IW50
Splice isoforms : SwissVarQ8IW50
PhosPhoSitePlusQ8IW50
Domains : Interpro (EBI)FAM219   
Domain families : Pfam (Sanger)FAM219A (PF15260)   
Domain families : Pfam (NCBI)pfam15260   
Conserved Domain (NCBI)FAM219A
DMDM Disease mutations203259
Blocks (Seattle)FAM219A
SuperfamilyQ8IW50
Human Protein AtlasENSG00000164970
Peptide AtlasQ8IW50
HPRD12950
IPIIPI00641856   IPI00478359   IPI00914009   IPI00647165   IPI00238482   IPI00796819   IPI00514133   IPI00980838   IPI00976361   IPI00513989   
Protein Interaction databases
DIP (DOE-UCLA)Q8IW50
IntAct (EBI)Q8IW50
FunCoupENSG00000164970
BioGRIDFAM219A
STRING (EMBL)FAM219A
ZODIACFAM219A
Ontologies - Pathways
QuickGOQ8IW50
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM219A
Atlas of Cancer Signalling NetworkFAM219A
Wikipedia pathwaysFAM219A
Orthology - Evolution
OrthoDB203259
GeneTree (enSembl)ENSG00000164970
Phylogenetic Trees/Animal Genes : TreeFamFAM219A
HOVERGENQ8IW50
HOGENOMQ8IW50
Homologs : HomoloGeneFAM219A
Homology/Alignments : Family Browser (UCSC)FAM219A
Gene fusions - Rearrangements
Fusion : MitelmanFAM219A/S1PR5 [9p13.3/19p13.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM219A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM219A
dbVarFAM219A
ClinVarFAM219A
1000_GenomesFAM219A 
Exome Variant ServerFAM219A
ExAC (Exome Aggregation Consortium)FAM219A (select the gene name)
Genetic variants : HAPMAP203259
Genomic Variants (DGV)FAM219A [DGVbeta]
DECIPHER (Syndromes)9:34398182-34458568  ENSG00000164970
CONAN: Copy Number AnalysisFAM219A 
Mutations
ICGC Data PortalFAM219A 
TCGA Data PortalFAM219A 
Broad Tumor PortalFAM219A
OASIS PortalFAM219A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM219A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM219A
BioMutasearch FAM219A
DgiDB (Drug Gene Interaction Database)FAM219A
DoCM (Curated mutations)FAM219A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM219A (select a term)
intoGenFAM219A
Cancer3DFAM219A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM219A
Genetic Testing Registry FAM219A
NextProtQ8IW50 [Medical]
TSGene203259
GENETestsFAM219A
Huge Navigator FAM219A [HugePedia]
snp3D : Map Gene to Disease203259
BioCentury BCIQFAM219A
ClinGenFAM219A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203259
Chemical/Pharm GKB GenePA134916501
Clinical trialFAM219A
Miscellaneous
canSAR (ICR)FAM219A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM219A
EVEXFAM219A
GoPubMedFAM219A
iHOPFAM219A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:29 CET 2017

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