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FAM219B (family with sequence similarity 219 member B)

Identity

Alias_namesC15orf17
chromosome 15 open reading frame 17
family with sequence similarity 219, member B
Alias_symbol (synonym)FLJ00005
Other alias
HGNC (Hugo) FAM219B
LocusID (NCBI) 57184
Atlas_Id 63147
Location 15q24.1  [Link to chromosome band 15q24]
Location_base_pair Starts at 74899987 and ends at 74906894 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM219B   24695
Cards
Entrez_Gene (NCBI)FAM219B  57184  family with sequence similarity 219 member B
AliasesC15orf17
GeneCards (Weizmann)FAM219B
Ensembl hg19 (Hinxton)ENSG00000178761 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178761 [Gene_View]  chr15:74899987-74906894 [Contig_View]  FAM219B [Vega]
ICGC DataPortalENSG00000178761
TCGA cBioPortalFAM219B
AceView (NCBI)FAM219B
Genatlas (Paris)FAM219B
WikiGenes57184
SOURCE (Princeton)FAM219B
Genetics Home Reference (NIH)FAM219B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM219B  -     chr15:74899987-74906894 -  15q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM219B  -     15q24.1   [Description]    (hg19-Feb_2009)
EnsemblFAM219B - 15q24.1 [CytoView hg19]  FAM219B - 15q24.1 [CytoView hg38]
Mapping of homologs : NCBIFAM219B [Mapview hg19]  FAM219B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000005 AK001572 AK025373 AK291020 AK296403
RefSeq transcript (Entrez)NM_001321920 NM_001321921 NM_001321922 NM_001321923 NM_020447
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM219B
Cluster EST : UnigeneHs.367690 [ NCBI ]
CGAP (NCI)Hs.367690
Alternative Splicing GalleryENSG00000178761
Gene ExpressionFAM219B [ NCBI-GEO ]   FAM219B [ EBI - ARRAY_EXPRESS ]   FAM219B [ SEEK ]   FAM219B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM219B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57184
GTEX Portal (Tissue expression)FAM219B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5XKK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5XKK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5XKK7
Splice isoforms : SwissVarQ5XKK7
PhosPhoSitePlusQ5XKK7
Domains : Interpro (EBI)FAM219   
Domain families : Pfam (Sanger)FAM219A (PF15260)   
Domain families : Pfam (NCBI)pfam15260   
Conserved Domain (NCBI)FAM219B
DMDM Disease mutations57184
Blocks (Seattle)FAM219B
SuperfamilyQ5XKK7
Human Protein AtlasENSG00000178761
Peptide AtlasQ5XKK7
HPRD12667
IPIIPI00784137   IPI00760590   IPI00792010   
Protein Interaction databases
DIP (DOE-UCLA)Q5XKK7
IntAct (EBI)Q5XKK7
FunCoupENSG00000178761
BioGRIDFAM219B
STRING (EMBL)FAM219B
ZODIACFAM219B
Ontologies - Pathways
QuickGOQ5XKK7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM219B
Atlas of Cancer Signalling NetworkFAM219B
Wikipedia pathwaysFAM219B
Orthology - Evolution
OrthoDB57184
GeneTree (enSembl)ENSG00000178761
Phylogenetic Trees/Animal Genes : TreeFamFAM219B
HOVERGENQ5XKK7
HOGENOMQ5XKK7
Homologs : HomoloGeneFAM219B
Homology/Alignments : Family Browser (UCSC)FAM219B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM219B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM219B
dbVarFAM219B
ClinVarFAM219B
1000_GenomesFAM219B 
Exome Variant ServerFAM219B
ExAC (Exome Aggregation Consortium)FAM219B (select the gene name)
Genetic variants : HAPMAP57184
Genomic Variants (DGV)FAM219B [DGVbeta]
DECIPHERFAM219B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM219B 
Mutations
ICGC Data PortalFAM219B 
TCGA Data PortalFAM219B 
Broad Tumor PortalFAM219B
OASIS PortalFAM219B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM219B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM219B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM219B
DgiDB (Drug Gene Interaction Database)FAM219B
DoCM (Curated mutations)FAM219B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM219B (select a term)
intoGenFAM219B
Cancer3DFAM219B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM219B
Genetic Testing Registry FAM219B
NextProtQ5XKK7 [Medical]
TSGene57184
GENETestsFAM219B
Target ValidationFAM219B
Huge Navigator FAM219B [HugePedia]
snp3D : Map Gene to Disease57184
BioCentury BCIQFAM219B
ClinGenFAM219B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57184
Chemical/Pharm GKB GenePA134953632
Clinical trialFAM219B
Miscellaneous
canSAR (ICR)FAM219B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM219B
EVEXFAM219B
GoPubMedFAM219B
iHOPFAM219B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:17 CEST 2017

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