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FAM21A (family with sequence similarity 21, member A)

Identity

Alias_namesFAM21B
family with sequence similarity 21, member B
family with sequence similarity 21, member A
Alias_symbol (synonym)bA56A21.1
bA98I6.1
FLJ10824
Other alias
HGNC (Hugo) FAM21A
LocusID (NCBI) 387680
Atlas_Id 63148
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 51827648 and ends at 51893269 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM21A   23416
Cards
Entrez_Gene (NCBI)FAM21A  387680  family with sequence similarity 21, member A
AliasesFAM21B; bA56A21.1; bA98I6.1
GeneCards (Weizmann)FAM21A
Ensembl hg19 (Hinxton)ENSG00000099290 [Gene_View]  chr10:51827648-51893269 [Contig_View]  FAM21A [Vega]
Ensembl hg38 (Hinxton)ENSG00000099290 [Gene_View]  chr10:51827648-51893269 [Contig_View]  FAM21A [Vega]
ICGC DataPortalENSG00000099290
TCGA cBioPortalFAM21A
AceView (NCBI)FAM21A
Genatlas (Paris)FAM21A
WikiGenes387680
SOURCE (Princeton)FAM21A
Genetics Home Reference (NIH)FAM21A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM21A  -     chr10:51827648-51893269 +  10q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM21A  -     10q11.23   [Description]    (hg38-Dec_2013)
EnsemblFAM21A - 10q11.23 [CytoView hg19]  FAM21A - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBIFAM21A [Mapview hg19]  FAM21A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA147749 AK001686 AK055424 AK125147 AK295129
RefSeq transcript (Entrez)NM_001005751 NM_001291398 NM_018232
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)FAM21A
Cluster EST : UnigeneHs.645272 [ NCBI ]
CGAP (NCI)Hs.645272
Alternative Splicing GalleryENSG00000099290
Gene ExpressionFAM21A [ NCBI-GEO ]   FAM21A [ EBI - ARRAY_EXPRESS ]   FAM21A [ SEEK ]   FAM21A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM21A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387680
GTEX Portal (Tissue expression)FAM21A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ641Q2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ641Q2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ641Q2
Splice isoforms : SwissVarQ641Q2
PhosPhoSitePlusQ641Q2
Domains : Interpro (EBI)FAM21    FAM21/CAPZIP   
Domain families : Pfam (Sanger)CAP-ZIP_m (PF15255)   
Domain families : Pfam (NCBI)pfam15255   
Conserved Domain (NCBI)FAM21A
DMDM Disease mutations387680
Blocks (Seattle)FAM21A
SuperfamilyQ641Q2
Human Protein AtlasENSG00000099290
Peptide AtlasQ641Q2
HPRD17364
IPIIPI00792422   IPI01012041   IPI00936037   IPI00294810   IPI00470523   IPI00941002   
Protein Interaction databases
DIP (DOE-UCLA)Q641Q2
IntAct (EBI)Q641Q2
FunCoupENSG00000099290
BioGRIDFAM21A
STRING (EMBL)FAM21A
ZODIACFAM21A
Ontologies - Pathways
QuickGOQ641Q2
Ontology : AmiGOearly endosome  plasma membrane  lipid binding  protein transport  early endosome membrane  retrograde transport, endosome to Golgi  WASH complex  
Ontology : EGO-EBIearly endosome  plasma membrane  lipid binding  protein transport  early endosome membrane  retrograde transport, endosome to Golgi  WASH complex  
NDEx NetworkFAM21A
Atlas of Cancer Signalling NetworkFAM21A
Wikipedia pathwaysFAM21A
Orthology - Evolution
OrthoDB387680
GeneTree (enSembl)ENSG00000099290
Phylogenetic Trees/Animal Genes : TreeFamFAM21A
HOVERGENQ641Q2
HOGENOMQ641Q2
Homologs : HomoloGeneFAM21A
Homology/Alignments : Family Browser (UCSC)FAM21A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM21A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM21A
dbVarFAM21A
ClinVarFAM21A
1000_GenomesFAM21A 
Exome Variant ServerFAM21A
ExAC (Exome Aggregation Consortium)FAM21A (select the gene name)
Genetic variants : HAPMAP387680
Genomic Variants (DGV)FAM21A [DGVbeta]
DECIPHER (Syndromes)10:51827648-51893269  ENSG00000099290
CONAN: Copy Number AnalysisFAM21A 
Mutations
ICGC Data PortalFAM21A 
TCGA Data PortalFAM21A 
Broad Tumor PortalFAM21A
OASIS PortalFAM21A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM21A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM21A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM21A
DgiDB (Drug Gene Interaction Database)FAM21A
DoCM (Curated mutations)FAM21A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM21A (select a term)
intoGenFAM21A
Cancer3DFAM21A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM21A
Genetic Testing Registry FAM21A
NextProtQ641Q2 [Medical]
TSGene387680
GENETestsFAM21A
Huge Navigator FAM21A [HugePedia]
snp3D : Map Gene to Disease387680
BioCentury BCIQFAM21A
ClinGenFAM21A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387680
Chemical/Pharm GKB GenePA134902481
Clinical trialFAM21A
Miscellaneous
canSAR (ICR)FAM21A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM21A
EVEXFAM21A
GoPubMedFAM21A
iHOPFAM21A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:57 CET 2017

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