Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM220A (family with sequence similarity 220 member A)

Identity

Alias_namesC7orf70
chromosome 7 open reading frame 70
family with sequence similarity 220, member A
Alias_symbol (synonym)SIPAR
MGC12966
Other aliasACPIN1
HGNC (Hugo) FAM220A
LocusID (NCBI) 84792
Atlas_Id 63151
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 6329409 and ends at 6348959 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FAM220A   22422
Cards
Entrez_Gene (NCBI)FAM220A  84792  family with sequence similarity 220 member A
AliasesACPIN1; C7orf70; SIPAR
GeneCards (Weizmann)FAM220A
Ensembl hg19 (Hinxton)ENSG00000178397 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178397 [Gene_View]  chr7:6329409-6348959 [Contig_View]  FAM220A [Vega]
ICGC DataPortalENSG00000178397
TCGA cBioPortalFAM220A
AceView (NCBI)FAM220A
Genatlas (Paris)FAM220A
WikiGenes84792
SOURCE (Princeton)FAM220A
Genetics Home Reference (NIH)FAM220A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM220A  -     chr7:6329409-6348959 -  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM220A  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblFAM220A - 7p22.1 [CytoView hg19]  FAM220A - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBIFAM220A [Mapview hg19]  FAM220A [Mapview hg38]
OMIM616628   
Gene and transcription
Genbank (Entrez)AF533707 AK093156 AK311878 BC006110 BC140097
RefSeq transcript (Entrez)NM_001037163
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM220A
Cluster EST : UnigeneHs.696146 [ NCBI ]
CGAP (NCI)Hs.696146
Alternative Splicing GalleryENSG00000178397
Gene ExpressionFAM220A [ NCBI-GEO ]   FAM220A [ EBI - ARRAY_EXPRESS ]   FAM220A [ SEEK ]   FAM220A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM220A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84792
GTEX Portal (Tissue expression)FAM220A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4H9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4H9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4H9
Splice isoforms : SwissVarQ7Z4H9
PhosPhoSitePlusQ7Z4H9
Domains : Interpro (EBI)SIPAR   
Domain families : Pfam (Sanger)FAM220 (PF15487)   
Domain families : Pfam (NCBI)pfam15487   
Conserved Domain (NCBI)FAM220A
DMDM Disease mutations84792
Blocks (Seattle)FAM220A
SuperfamilyQ7Z4H9
Human Protein AtlasENSG00000178397
Peptide AtlasQ7Z4H9
HPRD14427
IPIIPI00456599   IPI00978410   IPI00982867   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4H9
IntAct (EBI)Q7Z4H9
FunCoupENSG00000178397
BioGRIDFAM220A
STRING (EMBL)FAM220A
ZODIACFAM220A
Ontologies - Pathways
QuickGOQ7Z4H9
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nucleus  protein dephosphorylation  positive regulation of protein binding  STAT family protein binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nucleus  protein dephosphorylation  positive regulation of protein binding  STAT family protein binding  
NDEx NetworkFAM220A
Atlas of Cancer Signalling NetworkFAM220A
Wikipedia pathwaysFAM220A
Orthology - Evolution
OrthoDB84792
GeneTree (enSembl)ENSG00000178397
Phylogenetic Trees/Animal Genes : TreeFamFAM220A
HOVERGENQ7Z4H9
HOGENOMQ7Z4H9
Homologs : HomoloGeneFAM220A
Homology/Alignments : Family Browser (UCSC)FAM220A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM220A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM220A
dbVarFAM220A
ClinVarFAM220A
1000_GenomesFAM220A 
Exome Variant ServerFAM220A
ExAC (Exome Aggregation Consortium)FAM220A (select the gene name)
Genetic variants : HAPMAP84792
Genomic Variants (DGV)FAM220A [DGVbeta]
DECIPHERFAM220A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM220A 
Mutations
ICGC Data PortalFAM220A 
TCGA Data PortalFAM220A 
Broad Tumor PortalFAM220A
OASIS PortalFAM220A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM220A
BioMutasearch FAM220A
DgiDB (Drug Gene Interaction Database)FAM220A
DoCM (Curated mutations)FAM220A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM220A (select a term)
intoGenFAM220A
Cancer3DFAM220A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616628   
Orphanet
MedgenFAM220A
Genetic Testing Registry FAM220A
NextProtQ7Z4H9 [Medical]
TSGene84792
GENETestsFAM220A
Target ValidationFAM220A
Huge Navigator FAM220A [HugePedia]
snp3D : Map Gene to Disease84792
BioCentury BCIQFAM220A
ClinGenFAM220A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84792
Chemical/Pharm GKB GenePA165617654
Clinical trialFAM220A
Miscellaneous
canSAR (ICR)FAM220A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM220A
EVEXFAM220A
GoPubMedFAM220A
iHOPFAM220A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:48:18 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.