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FAM221A (family with sequence similarity 221, member A)

Identity

Alias_namesC7orf46
chromosome 7 open reading frame 46
family with sequence similarity 221, member A
Alias_symbol (synonym)FLJ45875
MGC72075
DKFZp686F0810
Other alias
HGNC (Hugo) FAM221A
LocusID (NCBI) 340277
Atlas_Id 63152
Location 7p15.3  [Link to chromosome band 7p15]
Location_base_pair Starts at 23719733 and ends at 23742269 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM221A (7p15.3) / MUC4 (3q29)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM221A   27977
Cards
Entrez_Gene (NCBI)FAM221A  340277  family with sequence similarity 221, member A
AliasesC7orf46
GeneCards (Weizmann)FAM221A
Ensembl hg19 (Hinxton)ENSG00000188732 [Gene_View]  chr7:23719733-23742269 [Contig_View]  FAM221A [Vega]
Ensembl hg38 (Hinxton)ENSG00000188732 [Gene_View]  chr7:23719733-23742269 [Contig_View]  FAM221A [Vega]
ICGC DataPortalENSG00000188732
TCGA cBioPortalFAM221A
AceView (NCBI)FAM221A
Genatlas (Paris)FAM221A
WikiGenes340277
SOURCE (Princeton)FAM221A
Genetics Home Reference (NIH)FAM221A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM221A  -     chr7:23719733-23742269 +  7p15.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM221A  -     7p15.3   [Description]    (hg38-Dec_2013)
EnsemblFAM221A - 7p15.3 [CytoView hg19]  FAM221A - 7p15.3 [CytoView hg38]
Mapping of homologs : NCBIFAM221A [Mapview hg19]  FAM221A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI370799 AK127774 AL832127 BC026000 BC042034
RefSeq transcript (Entrez)NM_001127364 NM_001127365 NM_001300932 NM_199136
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)FAM221A
Cluster EST : UnigeneHs.598870 [ NCBI ]
CGAP (NCI)Hs.598870
Alternative Splicing GalleryENSG00000188732
Gene ExpressionFAM221A [ NCBI-GEO ]   FAM221A [ EBI - ARRAY_EXPRESS ]   FAM221A [ SEEK ]   FAM221A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM221A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340277
GTEX Portal (Tissue expression)FAM221A
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4D161   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4D161  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4D161
Splice isoforms : SwissVarA4D161
PhosPhoSitePlusA4D161
Domains : Interpro (EBI)Fam221a/b   
Domain families : Pfam (Sanger)DUF4475 (PF14753)   
Domain families : Pfam (NCBI)pfam14753   
Conserved Domain (NCBI)FAM221A
DMDM Disease mutations340277
Blocks (Seattle)FAM221A
SuperfamilyA4D161
Human Protein AtlasENSG00000188732
Peptide AtlasA4D161
HPRD14706
IPIIPI00395803   IPI00853231   IPI00852812   IPI00915849   IPI00915997   IPI00916607   
Protein Interaction databases
DIP (DOE-UCLA)A4D161
IntAct (EBI)A4D161
FunCoupENSG00000188732
BioGRIDFAM221A
STRING (EMBL)FAM221A
ZODIACFAM221A
Ontologies - Pathways
QuickGOA4D161
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM221A
Atlas of Cancer Signalling NetworkFAM221A
Wikipedia pathwaysFAM221A
Orthology - Evolution
OrthoDB340277
GeneTree (enSembl)ENSG00000188732
Phylogenetic Trees/Animal Genes : TreeFamFAM221A
HOVERGENA4D161
HOGENOMA4D161
Homologs : HomoloGeneFAM221A
Homology/Alignments : Family Browser (UCSC)FAM221A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM221A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM221A
dbVarFAM221A
ClinVarFAM221A
1000_GenomesFAM221A 
Exome Variant ServerFAM221A
ExAC (Exome Aggregation Consortium)FAM221A (select the gene name)
Genetic variants : HAPMAP340277
Genomic Variants (DGV)FAM221A [DGVbeta]
DECIPHER (Syndromes)7:23719733-23742269  ENSG00000188732
CONAN: Copy Number AnalysisFAM221A 
Mutations
ICGC Data PortalFAM221A 
TCGA Data PortalFAM221A 
Broad Tumor PortalFAM221A
OASIS PortalFAM221A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM221A
BioMutasearch FAM221A
DgiDB (Drug Gene Interaction Database)FAM221A
DoCM (Curated mutations)FAM221A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM221A (select a term)
intoGenFAM221A
Cancer3DFAM221A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM221A
Genetic Testing Registry FAM221A
NextProtA4D161 [Medical]
TSGene340277
GENETestsFAM221A
Huge Navigator FAM221A [HugePedia]
snp3D : Map Gene to Disease340277
BioCentury BCIQFAM221A
ClinGenFAM221A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340277
Chemical/Pharm GKB GenePA162380501
Clinical trialFAM221A
Miscellaneous
canSAR (ICR)FAM221A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM221A
EVEXFAM221A
GoPubMedFAM221A
iHOPFAM221A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:58 CET 2017

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