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FAM222A (family with sequence similarity 222 member A)

Identity

Alias_namesC12orf34
chromosome 12 open reading frame 34
family with sequence similarity 222, member A
Alias_symbol (synonym)FLJ14721
Other alias
HGNC (Hugo) FAM222A
LocusID (NCBI) 84915
Atlas_Id 63154
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 109714382 and ends at 109770507 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CIT (12q24.23) / FAM222A (12q24.11)FAM222A (12q24.11) / MSI1 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM222A   25915
Cards
Entrez_Gene (NCBI)FAM222A  84915  family with sequence similarity 222 member A
AliasesC12orf34
GeneCards (Weizmann)FAM222A
Ensembl hg19 (Hinxton)ENSG00000139438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139438 [Gene_View]  chr12:109714382-109770507 [Contig_View]  FAM222A [Vega]
ICGC DataPortalENSG00000139438
TCGA cBioPortalFAM222A
AceView (NCBI)FAM222A
Genatlas (Paris)FAM222A
WikiGenes84915
SOURCE (Princeton)FAM222A
Genetics Home Reference (NIH)FAM222A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM222A  -     chr12:109714382-109770507 +  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM222A  -     12q24.11   [Description]    (hg19-Feb_2009)
EnsemblFAM222A - 12q24.11 [CytoView hg19]  FAM222A - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBIFAM222A [Mapview hg19]  FAM222A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027627 AK074806 BC007844 BC020193 BC037221
RefSeq transcript (Entrez)NM_032829
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM222A
Cluster EST : UnigeneHs.661785 [ NCBI ]
CGAP (NCI)Hs.661785
Alternative Splicing GalleryENSG00000139438
Gene ExpressionFAM222A [ NCBI-GEO ]   FAM222A [ EBI - ARRAY_EXPRESS ]   FAM222A [ SEEK ]   FAM222A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM222A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84915
GTEX Portal (Tissue expression)FAM222A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5U5X8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5U5X8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5U5X8
Splice isoforms : SwissVarQ5U5X8
PhosPhoSitePlusQ5U5X8
Domains : Interpro (EBI)FAM222   
Domain families : Pfam (Sanger)FAM222A (PF15258)   
Domain families : Pfam (NCBI)pfam15258   
Conserved Domain (NCBI)FAM222A
DMDM Disease mutations84915
Blocks (Seattle)FAM222A
SuperfamilyQ5U5X8
Human Protein AtlasENSG00000139438
Peptide AtlasQ5U5X8
HPRD07868
IPIIPI00180066   
Protein Interaction databases
DIP (DOE-UCLA)Q5U5X8
IntAct (EBI)Q5U5X8
FunCoupENSG00000139438
BioGRIDFAM222A
STRING (EMBL)FAM222A
ZODIACFAM222A
Ontologies - Pathways
QuickGOQ5U5X8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM222A
Atlas of Cancer Signalling NetworkFAM222A
Wikipedia pathwaysFAM222A
Orthology - Evolution
OrthoDB84915
GeneTree (enSembl)ENSG00000139438
Phylogenetic Trees/Animal Genes : TreeFamFAM222A
HOVERGENQ5U5X8
HOGENOMQ5U5X8
Homologs : HomoloGeneFAM222A
Homology/Alignments : Family Browser (UCSC)FAM222A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM222A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM222A
dbVarFAM222A
ClinVarFAM222A
1000_GenomesFAM222A 
Exome Variant ServerFAM222A
ExAC (Exome Aggregation Consortium)FAM222A (select the gene name)
Genetic variants : HAPMAP84915
Genomic Variants (DGV)FAM222A [DGVbeta]
DECIPHERFAM222A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM222A 
Mutations
ICGC Data PortalFAM222A 
TCGA Data PortalFAM222A 
Broad Tumor PortalFAM222A
OASIS PortalFAM222A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM222A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM222A
DgiDB (Drug Gene Interaction Database)FAM222A
DoCM (Curated mutations)FAM222A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM222A (select a term)
intoGenFAM222A
Cancer3DFAM222A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM222A
Genetic Testing Registry FAM222A
NextProtQ5U5X8 [Medical]
TSGene84915
GENETestsFAM222A
Target ValidationFAM222A
Huge Navigator FAM222A [HugePedia]
snp3D : Map Gene to Disease84915
BioCentury BCIQFAM222A
ClinGenFAM222A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84915
Chemical/Pharm GKB GenePA143485364
Clinical trialFAM222A
Miscellaneous
canSAR (ICR)FAM222A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM222A
EVEXFAM222A
GoPubMedFAM222A
iHOPFAM222A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 15:48:19 CEST 2017

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