Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM222B (family with sequence similarity 222 member B)

Identity

Alias_namesC17orf63
chromosome 17 open reading frame 63
family with sequence similarity 222, member B
Alias_symbol (synonym)FLJ10700
Other alias
HGNC (Hugo) FAM222B
LocusID (NCBI) 55731
Atlas_Id 63156
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28755978 and ends at 28842839 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DNAJC3 (13q32.1) / FAM222B (17q11.2)ENG (9q34.11) / FAM222B (17q11.2)FAM222B (17q11.2) / CHD7 (8q12.2)
FAM222B (17q11.2) / DOPEY2 (21q22.12)FAM222B (17q11.2) / FAM222B (17q11.2)FAM222B (17q11.2) / GIP (17q21.32)
FAM222B (17q11.2) / GYS2 (12p12.1)FAM222B (17q11.2) / NEK8 (17q11.2)FAM222B (17q11.2) / PHF12 (17q11.2)
FAM222B (17q11.2) / SEZ6 (17q11.2)FAM222B (17q11.2) / UNC5D (8p12)LOXL4 (10q24.2) / FAM222B (17q11.2)
TANC2 (17q23.2) / FAM222B (17q11.2)TAOK1 (17q11.2) / FAM222B (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM222B   25563
Cards
Entrez_Gene (NCBI)FAM222B  55731  family with sequence similarity 222 member B
AliasesC17orf63
GeneCards (Weizmann)FAM222B
Ensembl hg19 (Hinxton)ENSG00000173065 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173065 [Gene_View]  chr17:28755978-28842839 [Contig_View]  FAM222B [Vega]
ICGC DataPortalENSG00000173065
TCGA cBioPortalFAM222B
AceView (NCBI)FAM222B
Genatlas (Paris)FAM222B
WikiGenes55731
SOURCE (Princeton)FAM222B
Genetics Home Reference (NIH)FAM222B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM222B  -     chr17:28755978-28842839 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM222B  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblFAM222B - 17q11.2 [CytoView hg19]  FAM222B - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIFAM222B [Mapview hg19]  FAM222B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000147 AK001562 AK025980 AK057665 AK095569
RefSeq transcript (Entrez)NM_001077498 NM_001288631 NM_001288632 NM_001288633 NM_001288634 NM_001288635 NM_001288636 NM_001288637 NM_001288638 NM_001288639 NM_001288640 NM_018182
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM222B
Cluster EST : UnigeneHs.564533 [ NCBI ]
CGAP (NCI)Hs.564533
Alternative Splicing GalleryENSG00000173065
Gene ExpressionFAM222B [ NCBI-GEO ]   FAM222B [ EBI - ARRAY_EXPRESS ]   FAM222B [ SEEK ]   FAM222B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM222B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55731
GTEX Portal (Tissue expression)FAM222B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WU58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WU58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WU58
Splice isoforms : SwissVarQ8WU58
PhosPhoSitePlusQ8WU58
Domains : Interpro (EBI)FAM222   
Domain families : Pfam (Sanger)FAM222A (PF15258)   
Domain families : Pfam (NCBI)pfam15258   
Conserved Domain (NCBI)FAM222B
DMDM Disease mutations55731
Blocks (Seattle)FAM222B
SuperfamilyQ8WU58
Human Protein AtlasENSG00000173065
Peptide AtlasQ8WU58
HPRD07693
IPIIPI00291010   
Protein Interaction databases
DIP (DOE-UCLA)Q8WU58
IntAct (EBI)Q8WU58
FunCoupENSG00000173065
BioGRIDFAM222B
STRING (EMBL)FAM222B
ZODIACFAM222B
Ontologies - Pathways
QuickGOQ8WU58
Ontology : AmiGOnucleoplasm  
Ontology : EGO-EBInucleoplasm  
NDEx NetworkFAM222B
Atlas of Cancer Signalling NetworkFAM222B
Wikipedia pathwaysFAM222B
Orthology - Evolution
OrthoDB55731
GeneTree (enSembl)ENSG00000173065
Phylogenetic Trees/Animal Genes : TreeFamFAM222B
HOVERGENQ8WU58
HOGENOMQ8WU58
Homologs : HomoloGeneFAM222B
Homology/Alignments : Family Browser (UCSC)FAM222B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM222B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM222B
dbVarFAM222B
ClinVarFAM222B
1000_GenomesFAM222B 
Exome Variant ServerFAM222B
ExAC (Exome Aggregation Consortium)FAM222B (select the gene name)
Genetic variants : HAPMAP55731
Genomic Variants (DGV)FAM222B [DGVbeta]
DECIPHERFAM222B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM222B 
Mutations
ICGC Data PortalFAM222B 
TCGA Data PortalFAM222B 
Broad Tumor PortalFAM222B
OASIS PortalFAM222B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM222B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM222B
DgiDB (Drug Gene Interaction Database)FAM222B
DoCM (Curated mutations)FAM222B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM222B (select a term)
intoGenFAM222B
Cancer3DFAM222B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM222B
Genetic Testing Registry FAM222B
NextProtQ8WU58 [Medical]
TSGene55731
GENETestsFAM222B
Target ValidationFAM222B
Huge Navigator FAM222B [HugePedia]
snp3D : Map Gene to Disease55731
BioCentury BCIQFAM222B
ClinGenFAM222B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55731
Chemical/Pharm GKB GenePA142672246
Clinical trialFAM222B
Miscellaneous
canSAR (ICR)FAM222B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM222B
EVEXFAM222B
GoPubMedFAM222B
iHOPFAM222B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:48:19 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.