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FAM222B (family with sequence similarity 222 member B)

Identity

Alias (NCBI)C17orf63
HGNC (Hugo) FAM222B
HGNC Alias symbFLJ10700
HGNC Previous nameC17orf63
HGNC Previous namechromosome 17 open reading frame 63
 family with sequence similarity 222, member B
LocusID (NCBI) 55731
Atlas_Id 63156
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28755980 and ends at 28842790 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNAJC3 (13q32.1) / FAM222B (17q11.2)ENG (9q34.11) / FAM222B (17q11.2)FAM222B (17q11.2) / CHD7 (8q12.2)
FAM222B (17q11.2) / DOPEY2 (21q22.12)FAM222B (17q11.2) / FAM222B (17q11.2)FAM222B (17q11.2) / GIP (17q21.32)
FAM222B (17q11.2) / GYS2 (12p12.1)FAM222B (17q11.2) / NEK8 (17q11.2)FAM222B (17q11.2) / PHF12 (17q11.2)
FAM222B (17q11.2) / SEZ6 (17q11.2)FAM222B (17q11.2) / UNC5D (8p12)LOXL4 (10q24.2) / FAM222B (17q11.2)
TANC2 (17q23.2) / FAM222B (17q11.2)TAOK1 (17q11.2) / FAM222B (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FAM222B   25563
Cards
Entrez_Gene (NCBI)FAM222B    family with sequence similarity 222 member B
AliasesC17orf63
GeneCards (Weizmann)FAM222B
Ensembl hg19 (Hinxton)ENSG00000173065 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173065 [Gene_View]  ENSG00000173065 [Sequence]  chr17:28755980-28842790 [Contig_View]  FAM222B [Vega]
ICGC DataPortalENSG00000173065
TCGA cBioPortalFAM222B
AceView (NCBI)FAM222B
Genatlas (Paris)FAM222B
SOURCE (Princeton)FAM222B
Genetics Home Reference (NIH)FAM222B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM222B  -     chr17:28755980-28842790 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM222B  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathFAM222B - 17q11.2 [CytoView hg19]  FAM222B - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000173065
Genome Data Viewer NCBIFAM222B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK000147 AK001562 AK025980 AK057665 AK095569
RefSeq transcript (Entrez)NM_001077498 NM_001288631 NM_001288632 NM_001288633 NM_001288634 NM_001288635 NM_001288636 NM_001288637 NM_001288638 NM_001288639 NM_001288640 NM_018182
Consensus coding sequences : CCDS (NCBI)FAM222B
Gene ExpressionFAM222B [ NCBI-GEO ]   FAM222B [ EBI - ARRAY_EXPRESS ]   FAM222B [ SEEK ]   FAM222B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM222B [ Firebrowse - Broad ]
GenevisibleExpression of FAM222B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55731
GTEX Portal (Tissue expression)FAM222B
Human Protein AtlasENSG00000173065-FAM222B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WU58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WU58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WU58
PhosPhoSitePlusQ8WU58
Domains : Interpro (EBI)FAM222   
Domain families : Pfam (Sanger)FAM222A (PF15258)   
Domain families : Pfam (NCBI)pfam15258   
Conserved Domain (NCBI)FAM222B
SuperfamilyQ8WU58
AlphaFold pdb e-kbQ8WU58   
Human Protein Atlas [tissue]ENSG00000173065-FAM222B [tissue]
HPRD07693
Protein Interaction databases
DIP (DOE-UCLA)Q8WU58
IntAct (EBI)Q8WU58
BioGRIDFAM222B
STRING (EMBL)FAM222B
ZODIACFAM222B
Ontologies - Pathways
QuickGOQ8WU58
Ontology : AmiGOprotein binding  nucleoplasm  
Ontology : EGO-EBIprotein binding  nucleoplasm  
NDEx NetworkFAM222B
Atlas of Cancer Signalling NetworkFAM222B
Wikipedia pathwaysFAM222B
Orthology - Evolution
OrthoDB55731
GeneTree (enSembl)ENSG00000173065
Phylogenetic Trees/Animal Genes : TreeFamFAM222B
Homologs : HomoloGeneFAM222B
Homology/Alignments : Family Browser (UCSC)FAM222B
Gene fusions - Rearrangements
Fusion : QuiverFAM222B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM222B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM222B
dbVarFAM222B
ClinVarFAM222B
MonarchFAM222B
1000_GenomesFAM222B 
Exome Variant ServerFAM222B
GNOMAD BrowserENSG00000173065
Varsome BrowserFAM222B
ACMGFAM222B variants
VarityQ8WU58
Genomic Variants (DGV)FAM222B [DGVbeta]
DECIPHERFAM222B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM222B 
Mutations
ICGC Data PortalFAM222B 
TCGA Data PortalFAM222B 
Broad Tumor PortalFAM222B
OASIS PortalFAM222B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM222B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM222B
Mutations and Diseases : HGMDFAM222B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFAM222B
DgiDB (Drug Gene Interaction Database)FAM222B
DoCM (Curated mutations)FAM222B
CIViC (Clinical Interpretations of Variants in Cancer)FAM222B
Cancer3DFAM222B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM222B
MedgenFAM222B
Genetic Testing Registry FAM222B
NextProtQ8WU58 [Medical]
GENETestsFAM222B
Target ValidationFAM222B
Huge Navigator FAM222B [HugePedia]
ClinGenFAM222B
Clinical trials, drugs, therapy
MyCancerGenomeFAM222B
Protein Interactions : CTDFAM222B
Pharm GKB GenePA142672246
PharosQ8WU58
Clinical trialFAM222B
Miscellaneous
canSAR (ICR)FAM222B
HarmonizomeFAM222B
DataMed IndexFAM222B
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM222B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:49:51 CEST 2021

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