Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FAM223A (family with sequence similarity 223 member A (non-protein coding))

Identity

Alias_namesCXorf52
NCRNA00204
NCRNA00204A
LINC00204A
chromosome X open reading frame 52
non-protein coding RNA 204
non-protein coding RNA 204A
long intergenic non-protein coding RNA 204A
family with sequence similarity 223, member A (non-protein coding)
Alias_symbol (synonym)SPCX
Other alias
HGNC (Hugo) FAM223A
LocusID (NCBI) 100132967
Atlas_Id 63157
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154571248 and ends at 154571957 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM223A   30612
Cards
Entrez_Gene (NCBI)FAM223A  100132967  family with sequence similarity 223 member A (non-protein coding)
AliasesCXorf52; LINC00204A; NCRNA00204; NCRNA00204A; 
SPCX
GeneCards (Weizmann)FAM223A
Ensembl hg19 (Hinxton)ENSG00000279245 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000279245 [Gene_View]  chrX:154571248-154571957 [Contig_View]  FAM223A [Vega]
ICGC DataPortalENSG00000279245
TCGA cBioPortalFAM223A
AceView (NCBI)FAM223A
Genatlas (Paris)FAM223A
WikiGenes100132967
SOURCE (Princeton)FAM223A
Genetics Home Reference (NIH)FAM223A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM223A  -     chrX:154571248-154571957 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM223A  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblFAM223A - Xq28 [CytoView hg19]  FAM223A - Xq28 [CytoView hg38]
Mapping of homologs : NCBIFAM223A [Mapview hg19]  FAM223A [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM223A
Alternative Splicing GalleryENSG00000279245
Gene ExpressionFAM223A [ NCBI-GEO ]   FAM223A [ EBI - ARRAY_EXPRESS ]   FAM223A [ SEEK ]   FAM223A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM223A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132967
GTEX Portal (Tissue expression)FAM223A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWN6
Splice isoforms : SwissVarQ8IWN6
PhosPhoSitePlusQ8IWN6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM223A
DMDM Disease mutations100132967
Blocks (Seattle)FAM223A
SuperfamilyQ8IWN6
Human Protein AtlasENSG00000279245
Peptide AtlasQ8IWN6
IPIIPI00217320   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWN6
IntAct (EBI)Q8IWN6
FunCoupENSG00000279245
BioGRIDFAM223A
STRING (EMBL)FAM223A
ZODIACFAM223A
Ontologies - Pathways
QuickGOQ8IWN6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM223A
Atlas of Cancer Signalling NetworkFAM223A
Wikipedia pathwaysFAM223A
Orthology - Evolution
OrthoDB100132967
GeneTree (enSembl)ENSG00000279245
Phylogenetic Trees/Animal Genes : TreeFamFAM223A
HOVERGENQ8IWN6
HOGENOMQ8IWN6
Homologs : HomoloGeneFAM223A
Homology/Alignments : Family Browser (UCSC)FAM223A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM223A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM223A
dbVarFAM223A
ClinVarFAM223A
1000_GenomesFAM223A 
Exome Variant ServerFAM223A
ExAC (Exome Aggregation Consortium)FAM223A (select the gene name)
Genetic variants : HAPMAP100132967
Genomic Variants (DGV)FAM223A [DGVbeta]
DECIPHERFAM223A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM223A 
Mutations
ICGC Data PortalFAM223A 
TCGA Data PortalFAM223A 
Broad Tumor PortalFAM223A
OASIS PortalFAM223A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM223A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM223A
DgiDB (Drug Gene Interaction Database)FAM223A
DoCM (Curated mutations)FAM223A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM223A (select a term)
intoGenFAM223A
Cancer3DFAM223A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM223A
Genetic Testing Registry FAM223A
NextProtQ8IWN6 [Medical]
TSGene100132967
GENETestsFAM223A
Target ValidationFAM223A
Huge Navigator FAM223A [HugePedia]
snp3D : Map Gene to Disease100132967
BioCentury BCIQFAM223A
ClinGenFAM223A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132967
Chemical/Pharm GKB GenePA165757212
Clinical trialFAM223A
Miscellaneous
canSAR (ICR)FAM223A (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM223A
EVEXFAM223A
GoPubMedFAM223A
iHOPFAM223A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:20 CEST 2017

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