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FAM223B (family with sequence similarity 223, member B (non-protein coding))

Identity

Alias_namesCXorf52B
NCRNA00204B
LINC00204B
chromosome X open reading frame 52B
non-protein coding RNA 204B
long intergenic non-protein coding RNA 204B
family with sequence similarity 223, member B (non-protein coding)
Other aliasCXorf52
HGNC (Hugo) FAM223B
LocusID (NCBI) 286967
Atlas_Id 63158
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153860739 and ends at 153861448 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM223B   34048
Cards
Entrez_Gene (NCBI)FAM223B  286967  family with sequence similarity 223, member B (non-protein coding)
AliasesCXorf52; CXorf52B; LINC00204B; NCRNA00204B
GeneCards (Weizmann)FAM223B
Ensembl hg19 (Hinxton)ENSG00000272681 [Gene_View]  chrX:153860739-153861448 [Contig_View]  FAM223B [Vega]
Ensembl hg38 (Hinxton)ENSG00000272681 [Gene_View]  chrX:153860739-153861448 [Contig_View]  FAM223B [Vega]
ICGC DataPortalENSG00000272681
TCGA cBioPortalFAM223B
AceView (NCBI)FAM223B
Genatlas (Paris)FAM223B
WikiGenes286967
SOURCE (Princeton)FAM223B
Genetics Home Reference (NIH)FAM223B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM223B  -     chrX:153860739-153861448 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM223B  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblFAM223B - Xq28 [CytoView hg19]  FAM223B - Xq28 [CytoView hg38]
Mapping of homologs : NCBIFAM223B [Mapview hg19]  FAM223B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY168775
RefSeq transcript (Entrez)NM_173168
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)FAM223B
Cluster EST : UnigeneHs.562090 [ NCBI ]
CGAP (NCI)Hs.562090
Alternative Splicing GalleryENSG00000272681
Gene ExpressionFAM223B [ NCBI-GEO ]   FAM223B [ EBI - ARRAY_EXPRESS ]   FAM223B [ SEEK ]   FAM223B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM223B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286967
GTEX Portal (Tissue expression)FAM223B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKX1
Splice isoforms : SwissVarA6NKX1
PhosPhoSitePlusA6NKX1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM223B
DMDM Disease mutations286967
Blocks (Seattle)FAM223B
SuperfamilyA6NKX1
Human Protein AtlasENSG00000272681
Peptide AtlasA6NKX1
HPRD06724
IPIIPI00479478   
Protein Interaction databases
DIP (DOE-UCLA)A6NKX1
IntAct (EBI)A6NKX1
FunCoupENSG00000272681
BioGRIDFAM223B
STRING (EMBL)FAM223B
ZODIACFAM223B
Ontologies - Pathways
QuickGOA6NKX1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM223B
Atlas of Cancer Signalling NetworkFAM223B
Wikipedia pathwaysFAM223B
Orthology - Evolution
OrthoDB286967
GeneTree (enSembl)ENSG00000272681
Phylogenetic Trees/Animal Genes : TreeFamFAM223B
HOVERGENA6NKX1
HOGENOMA6NKX1
Homologs : HomoloGeneFAM223B
Homology/Alignments : Family Browser (UCSC)FAM223B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM223B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM223B
dbVarFAM223B
ClinVarFAM223B
1000_GenomesFAM223B 
Exome Variant ServerFAM223B
ExAC (Exome Aggregation Consortium)FAM223B (select the gene name)
Genetic variants : HAPMAP286967
Genomic Variants (DGV)FAM223B [DGVbeta]
DECIPHER (Syndromes)X:153860739-153861448  ENSG00000272681
CONAN: Copy Number AnalysisFAM223B 
Mutations
ICGC Data PortalFAM223B 
TCGA Data PortalFAM223B 
Broad Tumor PortalFAM223B
OASIS PortalFAM223B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM223B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM223B
DgiDB (Drug Gene Interaction Database)FAM223B
DoCM (Curated mutations)FAM223B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM223B (select a term)
intoGenFAM223B
Cancer3DFAM223B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM223B
Genetic Testing Registry FAM223B
NextProtA6NKX1 [Medical]
TSGene286967
GENETestsFAM223B
Huge Navigator FAM223B [HugePedia]
snp3D : Map Gene to Disease286967
BioCentury BCIQFAM223B
ClinGenFAM223B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286967
Chemical/Pharm GKB GenePA165757271
Clinical trialFAM223B
Miscellaneous
canSAR (ICR)FAM223B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM223B
EVEXFAM223B
GoPubMedFAM223B
iHOPFAM223B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:59 CET 2017

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