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FAM227A (family with sequence similarity 227 member A)

Identity

Alias_namesfamily with sequence similarity 227, member A
Other alias-
HGNC (Hugo) FAM227A
LocusID (NCBI) 646851
Atlas_Id 63165
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 38578120 and ends at 38656629 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM227A   44197
Cards
Entrez_Gene (NCBI)FAM227A  646851  family with sequence similarity 227 member A
Aliases
GeneCards (Weizmann)FAM227A
Ensembl hg19 (Hinxton)ENSG00000184949 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184949 [Gene_View]  chr22:38578120-38656629 [Contig_View]  FAM227A [Vega]
ICGC DataPortalENSG00000184949
TCGA cBioPortalFAM227A
AceView (NCBI)FAM227A
Genatlas (Paris)FAM227A
WikiGenes646851
SOURCE (Princeton)FAM227A
Genetics Home Reference (NIH)FAM227A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM227A  -     chr22:38578120-38656629 -  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM227A  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblFAM227A - 22q13.1 [CytoView hg19]  FAM227A - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBIFAM227A [Mapview hg19]  FAM227A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095080 AK301819 DA378202 DB053353 DV080205
RefSeq transcript (Entrez)NM_001013647 NM_001291030
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM227A
Cluster EST : UnigeneHs.542707 [ NCBI ]
CGAP (NCI)Hs.542707
Alternative Splicing GalleryENSG00000184949
Gene ExpressionFAM227A [ NCBI-GEO ]   FAM227A [ EBI - ARRAY_EXPRESS ]   FAM227A [ SEEK ]   FAM227A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM227A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646851
GTEX Portal (Tissue expression)FAM227A
Protein : pattern, domain, 3D structure
UniProt/SwissProtF5H4B4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF5H4B4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF5H4B4
Splice isoforms : SwissVarF5H4B4
PhosPhoSitePlusF5H4B4
Domains : Interpro (EBI)FAM227   
Domain families : Pfam (Sanger)FWWh (PF14922)   
Domain families : Pfam (NCBI)pfam14922   
Conserved Domain (NCBI)FAM227A
DMDM Disease mutations646851
Blocks (Seattle)FAM227A
SuperfamilyF5H4B4
Human Protein AtlasENSG00000184949
Peptide AtlasF5H4B4
IPIIPI00894232   IPI01009824   IPI00397864   
Protein Interaction databases
DIP (DOE-UCLA)F5H4B4
IntAct (EBI)F5H4B4
FunCoupENSG00000184949
BioGRIDFAM227A
STRING (EMBL)FAM227A
ZODIACFAM227A
Ontologies - Pathways
QuickGOF5H4B4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM227A
Atlas of Cancer Signalling NetworkFAM227A
Wikipedia pathwaysFAM227A
Orthology - Evolution
OrthoDB646851
GeneTree (enSembl)ENSG00000184949
Phylogenetic Trees/Animal Genes : TreeFamFAM227A
HOVERGENF5H4B4
HOGENOMF5H4B4
Homologs : HomoloGeneFAM227A
Homology/Alignments : Family Browser (UCSC)FAM227A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM227A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM227A
dbVarFAM227A
ClinVarFAM227A
1000_GenomesFAM227A 
Exome Variant ServerFAM227A
ExAC (Exome Aggregation Consortium)FAM227A (select the gene name)
Genetic variants : HAPMAP646851
Genomic Variants (DGV)FAM227A [DGVbeta]
DECIPHERFAM227A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM227A 
Mutations
ICGC Data PortalFAM227A 
TCGA Data PortalFAM227A 
Broad Tumor PortalFAM227A
OASIS PortalFAM227A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM227A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM227A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM227A
DgiDB (Drug Gene Interaction Database)FAM227A
DoCM (Curated mutations)FAM227A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM227A (select a term)
intoGenFAM227A
Cancer3DFAM227A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM227A
Genetic Testing Registry FAM227A
NextProtF5H4B4 [Medical]
TSGene646851
GENETestsFAM227A
Target ValidationFAM227A
Huge Navigator FAM227A [HugePedia]
snp3D : Map Gene to Disease646851
BioCentury BCIQFAM227A
ClinGenFAM227A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646851
Chemical/Pharm GKB GenePA166049113
Clinical trialFAM227A
Miscellaneous
canSAR (ICR)FAM227A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM227A
EVEXFAM227A
GoPubMedFAM227A
iHOPFAM227A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:22 CEST 2017

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